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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8e96D_

Fold library idPDB HeaderMoleculeTitle
c8e96D_3.38PDB header: transport proteinChain: D: PDB Molecule: glutamate receptor ionotropic, nmda 2d;


Added to library: Sat Dec 10 09:13:33 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ARPLNVALVFSGPAYAAEAARLGPAVAAAVRSPGLDVRPVALVLNGSDPRSLVLQLCDLLSGLRVHGVVF
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Known secondary structure (DSSP)






SGGGGTTTTTTTTT

BTTB







STTS

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence EDDSRAPAVAPILDFLSAQTSLPIVAVHGGAALVLTPKEKGSTFLQLGSSTEQQLQVIFEVLEEYDWTSF
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Known secondary structure (DSSP)





GGGTT



SSGGGS


S

TT






TTTTTTTTTTTT

 .........150.........160.........170.........180.........190.........200.........210
Sequence VAVTTRAPGHRAFLSYIEVLTDGSLVGWEHRGALTLDPGAGEAVLSAQLRSVSAQIRLLFCAREEAEPVF
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Known secondary structure (DSSP)
SSTTSS
TT



TTS
T



S

STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence RAAEEAGLTGSGYVWFMVGPQLAGGAPLPAGLFAVRSAGWRDDLARRVAAGVAVVARGAQALLRDYGFLP
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Known secondary structure (DSSP) TT

STT

SS








SS
TTTT

TSS

 .........290.........300.........310.........320.........330.........340.........350
Sequence ELGHDCRAQNRTHRGESLHRYFMNITWDNRDYSFNEDGFLVNPSLVVISLTRDRTWEVVGSWEQQTLRLK
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Known secondary structure (DSSP)




TTT



STTGGGGGGTTS
TT

B
SSSSBSS


TTT
TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence YPLWSRYGRFLQPVDDTQHLTVATLEERPFVIVEPADPISGTCIRDSVPCRSQLNRPRPEKRCCKGFCID
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Known secondary structure (DSSP) S

BTTBSSS


SSSSS





BTTTB

TTTSS

TT
B







TT
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence ILKRLAHTIGFSYDLYLVTNGKHGKKIDGVWNGMIGEVFYQRADMAIGSLTINEERSEIVDFSVPFVETG
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Known secondary structure (DSSP)




B



S
SS

TT
TSS
S
SS
B

TTSB




S
 .........500.........510.........520.........530.........540.........550.........560
Sequence ISVMVARSGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEDTVSGLSDRKFQRPQEQYPPLKFGTVPNG
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Known secondary structure (DSSP)


GGGTTS





STT


TTT
S






SSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence STEKNIRSNYPDMHSYMVRYNQPRVEEALTQLKAGKLDAFIYDAAVLNYMARKDEGCKLVTIGSGKVFAT
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Known secondary structure (DSSP) S
GGG

S
TTS



B
GGG
STTT

 .........640.........650.........660.........670.........680.........690.
Sequence TGYGIALHKGSRWKRPIDLALLQFLGDDEIEMLERLWLSGICHNAGVFYMLLVAMGLSLLV
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Known secondary structure (DSSP) B

BBSSS
TTTTS

B





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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