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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8dl2B_

Fold library idPDB HeaderMoleculeTitle
c8dl2B_1.99PDB header: hydrolaseChain: B: PDB Molecule: alpha amylase, catalytic domain protein;


Added to library: Sat May 27 09:06:52 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LHDGFNFDPAIPKADEPLTITFKAPEGSNFYGYADDLYLHSGTGANWTGAPTWGDNQNKYRLKKTKDNVW
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Known secondary structure (DSSP)

SSSS
BTTS


TTSTTTT

S
TTTTBT


TT


GGGTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence SITLSSSIRHFYSVAPSTPLQTINLIVRDAEGSQQTYDYATLVEDSQNGFIWEEPQKAPLPISGEEKEGI
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Known secondary structure (DSSP)
S
TT

TTS



TTS
SB




BBGGGTB





B


S

SS

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence HIHSATSIMLVLYDKDSQGGHKDCVFVTGNFNNWKLDSRYMMKYDETNHCWWITLEELTAETQFQYFVYS
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Known secondary structure (DSSP)
SSS



TTS


STTTTT


GGGB
TTTT
S



 .........220.........230.........240.........250.........260.........270.........280
Sequence ASDGGTYLCDPYCEQALEKGVDTNFPTGAQAPYVSVVSTNPQPYQWSAGEFEMKNKENPVIYELLLRDFT
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Known secondary structure (DSSP) TTT

TT
S
TTT
TT

TTS
SS
SS






S




TTTTS

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence SSGNLAGAMEKLPYLKELGIDAIELMPVQEFAGNDSWGYNTGLYFALDASYGTQNEYKAFIDACHQNGIA
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Known secondary structure (DSSP) TT
STTT
S


B
BSSSSS
S
SBS
SSSB
TTT

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence VIFDVVYNHTNNDNPFARMYWDTFNNRPSTKNPWLNAVTPHQKYVFSPDDFNHTSEQTKAFVKRNLKYLL
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Known secondary structure (DSSP)

SB

TTSSTTTT
TT
SSB
SS
SBTT

SSS
BB
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence DTYHIDGFRFDFTKGFTQKQTTGDDDLAATDPARVSVLKEYYEAVKAVKEDAMVTMEHFCANEETTLATE
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Known secondary structure (DSSP)


S
GGG


S
B
SSS


TT




 .........500.........510.........520.........530.........540.........550.........560
Sequence GIHFWRNMNHSYCQSAMGWKDNSDFSGLYDTTRPNQFVGYMESHDEERCAYKQIEYGNGALKTNLSERLK
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Known secondary structure (DSSP) T

T

TT


GGGS
SS
GGGS

TTS


SGGGGT
 .........570.........580.........590.........600.........610.........620.........630
Sequence QLSSNAAFFFTVPGPKMLWQFGEMGYDISIDENGRTGKKPVLWEYQTERKSLVDIYTKLITLRTTHSDLF
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Known secondary structure (DSSP) TTTTTSSS
TTGGGT



TTTT
TTS




TTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence NASSQFTWKVSYNDWDNGRTLTLKAVNGKQLHVYANFTNASIDYTIPEGTWYLYLENGNPVEGEKKISVP
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Known secondary structure (DSSP) STTS
STTSSTT

TTS


SSS


SS
TTT
S
SS

 .........710..
Sequence AHEFRLYTNFAE
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Known secondary structure (DSSP) TT
S



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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