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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8ditB_

Fold library idPDB HeaderMoleculeTitle
c8ditB_5.10PDB header: protein transportChain: B: PDB Molecule: vacuolar protein sorting-associated protein 16;


Added to library: Tue Sep 6 16:21:36 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MDTAHPTASWEQLGERFYRKIQLYTQVFDQDFDLDNYIVTGAPYGGAIALYRDDEKLVAYQPSRSSRPTI
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Known secondary structure (DSSP)
TTS


TT
SSS

S
GGG


TT


TTS


TTTTTTSS


SS

 .........80.........90.........100.........110.........120.........130.........140
Sequence DICSLSGKLLRRISWDQGPIKGVGWSEDEKLLIVMVDGTVRCYFDLQSEFTQFSLGHGAEEHGVKSCRFY
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Known secondary structure (DSSP)
TTS

SS


TT

TTS
STT



TT


 .........150.........160.........170.........180.........190.........200.........210
Sequence SHGLVALLGNNALVSVSSYDEPRPKLLASPPEGRVYSWNIIPPAYSLSRSVEVLLSVNQTIYVCDASECE
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Known secondary structure (DSSP) TT

TTS

S
TT






SS

TTT
SSSS
TT
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence DRFLDIGPFSHIAVSPNGRFCALYTTTGKVHVITSDFQSRLSEHDTKSKIAPNYFEWCGNDAVVIAWDDE
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Known secondary structure (DSSP)
S
SS
TTSSTTS
SS
SS

SS




S
SSSS

TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence VHLVGPSGSLARFFYDSGRIHLIPDFDGVRILANDRCDFLQKVPDVIEEVFGLGADSPASILLDAVEQLE
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Known secondary structure (DSSP)
TTS


SSS

TT

SS


SS

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence MKSPKADDNIQLIRPHLVEAVDTCVSAAGQEFSIHWQKQLLKAASFGKSVLDIYNSDDFVDMCETLRVLN
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Known secondary structure (DSSP) TT
TTTGGGTT

STT
SS

 .........430.........440.........450.........460.........470.........480.........490
Sequence AVRFYEVGLPLSYEQYQRLSPSGLISRLLNRHEYLLAIRIADHLRLPTDKIHVHWASAKVRLGSEDDDTI
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Known secondary structure (DSSP) TBSSSSB



S
TTTTT

TT




S
 .........500.........510.........520.........530.........540.........550.........560
Sequence CRKIVEKLSGKPGISFEVIARTAYEEGRTRLATELLNHEPRAGRQVPLLLSMEEDELALDKAIESGDTDL
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Known secondary structure (DSSP) TTS
SS
TT
GGG


TT
TTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence IYFVIHQLRRKLPLASFFRVVSSRPTASAMVEALARNSDGDGNEDTALLKDLYYQDDRRLDGASVFIREA
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Known secondary structure (DSSP) S
STTST
SSBTTB

TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence LQQPETRTASDKLDLAANLLQGNQKEHVFELGALKEAKMLLRMQETFERDLTDSFVGLSVNQTMFKLIKL
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Known secondary structure (DSSP) SSTTTTGGG

S

SS
SS

TT

T
 .........710.........720.........730.........740.........750.........760.........770
Sequence GYHGRAKKIQSEFKVPERVAWWIRLQALVAKRDWNEIEEISRQRKSPIGWEPFFNQVLQAGNPRLAATFI
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Known secondary structure (DSSP) T
TT

TT
TSS




TTTTTTT
TTTG
 .........780.........790.........800.........810.........820.........830....
Sequence PKCTNLEPGQTITMYEKCGMRVKAAEEAVRLKDTEAWNRLLEAAGRNTAEGREIERLGATVFKK
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Known secondary structure (DSSP) GGGGGT
TTTT
TT
TT
TTTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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