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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8dgfA_

Fold library idPDB HeaderMoleculeTitle
c8dgfA_2.90PDB header: antiviral proteinChain: A: PDB Molecule: atp-binding protein avs4;


Added to library: Sat Aug 6 08:44:33 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VKPNWDNFKAKFSENPQGNFEWFCYLLFCQEFKMPAGIFRYKNQSGIETNPITKDNEIIGWQSKFYDTKL
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Known secondary structure (DSSP)



TTT
TS



T
GGG




TT

SS
G
 .........80.........90.........100.........110.........120.........130.........140
Sequence SDNKADLIEMIEKSKKAYPGLSKIIFYTNQEWGQGNSNDPKIKIEVDQKAYESGIEIVWRVASFFESPFV
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Known secondary structure (DSSP) GGG
TT

S






TT

TT

TTTTTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence IVENEKIAKHFFSLNESIFDLLEEKRKHTENVLYEIQTNIEFKDRSIEIDRRHCIELLHENLVQKKIVIV
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Known secondary structure (DSSP) TTT
SS

TSS


STT




S
 .........220.........230.........240.........250.........260.........270.........280
Sequence SGEGGVGKTAVIKKIYEAEKQYTPFYVFKASEFKKDSINELFGAHGLDDFSNAHQDELRKVIVVDSAEKL
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Known secondary structure (DSSP)
STTSSTTTTTTS
GGGG
SS
GGGGGTTS
TTTT
S

SGGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence LELTNIDPFKEFLTVLIKDKWQVVFTTRNNYLADLNYAFIDIYKITPGNLVIKNLERGELIELSDNNGFS
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Known secondary structure (DSSP) GG
S

TT

GGGTS








T

 .........360.........370.........380.........390.........400.........410.........420
Sequence LPQDVRLLELIKNPFYLSEYLRFYTGESIDYVSFKEKLWNKIIVKNKPSREQCFLATAFQRASEGQFFVS
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Known secondary structure (DSSP)

S
TTTTSTTSTT
TTTT
T
SSB
 .........430.........440.........450.........460.........470.........480.........490
Sequence PACDTGILDELVKDGIVGYEAAGYFITHDIYEEWALEKKISVDYIRKANNNEFFEKIGESLPVRRSFRNW
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Known secondary structure (DSSP)



TTTTSTTS
T
SSS


 .........500.........510.........520.........530.........540.........550.........560
Sequence ISERLLLDDQSIKPFIAEIVCGEGISNFWKDELWVAVLLSDNSSIFFNYFKRYLLSSDQNLLKRLTFLLR
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Known secondary structure (DSSP) TT
TT
SSS
STTSTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence LACKDVDYDLLKQLGVSNSDLLSIKYVLTKPKGTGWQSVIQFIYENLDEIGIRNINFILPVIQEWNQRNK
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Known secondary structure (DSSP) S
TT




TTT
SS


STT
TTTGGGSTT

 .........640.........650.........660.........670.........680.........690.........700
Sequence VGETTRLSSLIALKYYQWTIDEDVYLSGRDNEKNILHTILHGAAMIKPEMEEVLVKVLKNRWKEHGTPYF
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Known secondary structure (DSSP) SSTT







TTSTTTS
T

STTSTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence DLMTLILTDLDSYPVWASLPEYVLQLADLFWYRPLDIEDEFGLFRSHHDYYPESPYQTPIYWLLQSQFKK
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Known secondary structure (DSSP)
GGG
B



TTTTTTB
GGGGGG
S

TTSST
 .........780.........790.........800.........810.........820.........830.........840
Sequence TIDFILDFTNKTTICFAHSHFAKNEIEEVDVFIEEGKFIKQYICNRLWCSYRGTQVSTYLLSSIHMALEK
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Known secondary structure (DSSP) TSTTTTTT
TT
TTTTT
SS

 .........850.........860.........870.........880.........890.........900.........910
Sequence FFLENFKNADSKVLESWLLFLLRNTKSASISAVVTSIVLAFPEKTFNVAKVLFQTKDFFRFDMNRMVLDR
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Known secondary structure (DSSP) STT


SBSTTT
TTSST
 .........920.........930.........940.........950.........960.........970.........980
Sequence THKSSLINSLHEEDRIKACDDVHRNTYLENLALHYQIFRSENVTEKDAIERQQVLWDIFDKYYNQLPDEA
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Known secondary structure (DSSP)

T
GGGG

TTT


TT

TT


GG
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence QETEADKTWRLCLARMDRRKMKITTKEKDEGIEISFNPEIDPKLKQYSEEAIKKNSEHMKYVTLKLWASY
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Known secondary structure (DSSP) G

TT
GGGTT


TTT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence KREKDERYKNYGMYEDNPQIALQETKEIIKKLNEEGGEDFRLLNGNIPADVCSVLLLDYFNQLNNEEREY
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Known secondary structure (DSSP) TT
GGGGG
TTTTT
TT

TT
TTTS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence CKDIVLAYSKLPLKEGYNYQVQDGTTSAISALPVIYHNYPMERETIKTILLLTLFNDHSIGMAGGRYSVF
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Known secondary structure (DSSP) TGGGSTT



TTSSTT
GGGT


TTTTTT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence PSMVIHKLWLDYFDDMQSLLFGFLILKPKYVILSRKIIHESYRQIKKININKVFLNNYKHCISNVIDNKI
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Known secondary structure (DSSP) TTTTT


TTS
TT

 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence SIDDLGSMDKVDLHILNTAFQLIPVDTVNIEHKKLVSLIVKRFSTSLLSSVREDRVDYALRQSFLERFAY
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Known secondary structure (DSSP)
TTSS

GGGS
TTS
TT


T


GGG


 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence FTLHAPVSDIPDYIKPFLDGFNGSEPISELFKKFILVEDRLNTYAKFWKVWDLFFDKVVTLCKDGDRYWY
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Known secondary structure (DSSP) TS
TTTST

S
T

TT
TTSTT
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence VDKIIKSYLFAESPWKENSNGWHTFKDSNSQFFCDVSRTMGHCPSTLYSLAKSLNNIASCYLNQGITWLS
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Known secondary structure (DSSP) TT
SS


TT
S

TT

GGGSTTSTTTGGG
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence EILSVNKKLWEKKLENDTVYYLECLVRRYINNERERIRRTKQLKQEVLVILDFLVEKGSVVGYMSRENIL
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Known secondary structure (DSSP)
GGGGTS


TT
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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