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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8ddsD_

Fold library idPDB HeaderMoleculeTitle
c8ddsD_3.50PDB header: membrane proteinChain: D: PDB Molecule: transient receptor potential cation channel, subfamily m,


Added to library: Sat Nov 5 12:14:12 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ISKHTQLSPTDAFGTIEFQGGGHSNKAMYVRVSFDTKPDLLLHLMTKEWQLELPKLLISVHGGLQNFELQ
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Known secondary structure (DSSP)

S








SSSS

TT

TTT



S


SS




 .........80.........90.........100.........110.........120.........130.........140
Sequence PKLKQVFGKGLIKAAMTTGAWIFTGGVNTGVIRHVGDALKDHASKSRGKICTIGIAPWGIVENQEDLIGR
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Known secondary structure (DSSP) TTTTT
B

BSSTTT

S

B
GGGBS
SSS


T
 .........150.........160.........170.........180.........190.........200.........210
Sequence DVVRPYQTMSNPMSKLTVLNSMHSHFILADNGTTGKYGAEVKLRRQLEKHISLQKINTRIGQGVPVVALI
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Known secondary structure (DSSP) T



GGGSSB
B
SS
SSS
SS


SSTSB
S
SS

B

 .........220.........230.........240.........250.........260.........270.........280
Sequence VEGGPNVISIVLEYLRDTPPVPVVVCDGSGRASDILAFGHKYSEVTIQKTFTYTRTQAQHLFIILMECMK
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Known secondary structure (DSSP)
S

TSSS




SSS
SSS



GGG
SSSSSTTTS

 .........290.........300.........310.........320.........330.........340.........350
Sequence KKELITVFRMGSEGHQDIDLAILTALLKGANASAPDQLSLALAWNRVDIARSQIFIYGQQWPVGSLEQAM
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Known secondary structure (DSSP) TTTT
B


TTTSS


TTT

TT
STTS
TT



TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence LDALVLDRVDFVKLLIENGVSMHRFLTISRLEELYNTRHGPSNTLYHLVRDVKKGNLPPDYRISLIDIGL
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Known secondary structure (DSSP) TT
TT



T

SSS

SSSSS


SS



 .........430.........440.........450.........460.........470.........480.........490
Sequence VIEYLMGGAYRCNYTRKRFRTLYHNLNHFPFPFHELMVWAVLMKRQKMALFFWQHGEEAMAKALVACKLC
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Known secondary structure (DSSP)
SS


STTST



SSTT
TSSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence KAMAHEASENDMVDDISQELNHNSRDFGQLAVELLDQSYKQDEQLAMKLLTYELKNWSNATCLQLAVAAK
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Known secondary structure (DSSP) TT

SS
TSS

TTTTS

TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence HRDFIAHTCSQMLLTDMWMGRLRMRKNSGLKVILGILLPPSILSLEFKNGRKIYEFYNAPIVKFWFYTLA
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Known secondary structure (DSSP)
TSSTTB


SS
SSSTTSSSS
B


TGGGS
 .........640.........650.........660.........670.........680.........690.........700
Sequence YIGYLMLFNYIVLVKMERWPSTQEWIVISYIFTLGIEKMREILMSEPGKLLQKVKVWLQEYWNVTDLIAI
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Known secondary structure (DSSP) TTS


SS

TSSSS
TTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence LLFSVGMILRLQDQPFRSDGRVIYCVNIIYWYIRLLDIFGVNKYLGPYVMMIGKMMIDMMYFVIIMLVVL
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Known secondary structure (DSSP) SSSTTTSTTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence MSFGVARQAILFPNEEPSWKLAKNIFYMPYWMIYGEVFADQIDPPCQLPPCKTGAWIVPAIMACYLLVAN
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Known secondary structure (DSSP)

S



TTTTTTT


TTTSS








TTTTS
 .........850.........860.........870.........880.........890.........900.........910
Sequence ILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHERPVLPPPLIIFSHMTMIFQHVCRDYGLKLFI
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Known secondary structure (DSSP) TTT
S
SS
GGGT


SSS



 .........920.........930.........940.........950.........960........
Sequence TDDELKKVHDFEEQCIEEYFREKDDRFNSSNDERIRVTSERVENMSMRLEEVNEREHS
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Known secondary structure (DSSP)
TSS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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