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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8d8j0_

Fold library idPDB HeaderMoleculeTitle
c8d8j0_3.80PDB header: ribosomeChain: 0: PDB Molecule: probable s-adenosyl-l-methionine-dependent rna


Added to library: Sat Dec 24 10:59:06 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ELRLLSKTLQGQSYRDQLELNPDVSKAINNNIMAVHIPNNLRRVATNYYKEIQEPNSLHRPCRTKMEVDA
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Known secondary structure (DSSP)


S
S


S
B


TTTSS
TTSSTT






S
 .........80.........90.........100.........110.........120.........130.........140
Sequence HIASIFLQNYGSIFQSLKELQKRVGPDNFKPQRILDVGYGPATGIVALNDILGPNYRPDLKDAVILGNAE
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Known secondary structure (DSSP)
TTT


SSSSS
TT


S
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence MQERAKIILSRQLIMTNLRSSIPASKEYDLIILTHQLLHDGNQFPIQVDENIEHYLNILAPGGHIVIIER
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Known secondary structure (DSSP) T



SS


SS
S
S
S
SSSTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence GNPMGFEIIARARQITLRPENFPDEFGKIPRPWNYFLKVIAPCPHQRKCPLQVGNPNFYTHKEGKDLKFC
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Known secondary structure (DSSP)
S
GGGSTT

S


B





SS
S
SS

TT

S
GGGGGSSTTTT



 .........290.........300.........310.........320.........330.........340.........350
Sequence NFQKSIKRPKFSIELKKGKLLATSWDNGRDYEILNYSYLIFERSHKDENTLKEIKKLRNENVNGKYDIGS
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Known secondary structure (DSSP)


S
STTTSS





S



STT






TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence LGDDTQNSWPRIINDPVKRKGHVMMDLCAPSGELEKWTVSRSFSKQIYHDARKSKKGDLWASAAKTQIKG
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Known secondary structure (DSSP)
TTSSGGG


S

TT
TT
STTT
ST

TT
B

S

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence LGDLNVKKFHKLEKERIKQLKKEERQKARKAMESYNELEDSLQFDDHQFSNFEVMKKLSTFHGNDFLQHV
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Known secondary structure (DSSP)
TT
TT


S
 ...
Sequence NRK
Predicted secondary structure


SS confidence


Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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