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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8d0kF_

Fold library idPDB HeaderMoleculeTitle
c8d0kF_4.27PDB header: replication/dnaChain: F: PDB Molecule: dna polymerase alpha catalytic subunit;


Added to library: Sat Jun 25 09:08:59 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPRE
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Known secondary structure (DSSP)

SSS



TTS

TTTSTT
TTTT



S
 .........80.........90.........100.........110.........120.........130.........140
Sequence MKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKSEYLEVKYSAEMPQ
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Known secondary structure (DSSP) S


TTT



S



T





SS

S

SSSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence LPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPVSWCKVEAMALKPDLVNVIKDVS
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Known secondary structure (DSSP)

TT


SS
SS

TTT

SS

S
B

SS

BSSS

TTS
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence PPPLVVMAFSMKTMQNAKNHQNEIIAMAALVHHSFALDKAAPKPPFQSHFCVVSKPKDCIFPYAFKEVIE
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Known secondary structure (DSSP)



TTT


SSSS

SSS
S


SS



TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence KKNVKVEVAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKAPHWSKIGRLKRSNMPKL
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Known secondary structure (DSSP) T


SS

SSSTTTTT
S
GGGGSSB







 .........360.........370.........380.........390.........400.........410.........420
Sequence GGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPMENIQNMYSESSQLLYLLE
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Known secondary structure (DSSP)

SS
TTTS


S


T







TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence HTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQGLVLDP
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Known secondary structure (DSSP) T
S
TT
TTTB







B


 .........500.........510.........520.........530.........540.........550.........560
Sequence KVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPELPDPSLEMGILPREIRK
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Known secondary structure (DSSP)





S
S
T

TTT





SSSSS
SSSS








TTS


S
 .........570.........580.........590.........600.........610.........620.........630
Sequence LVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHT
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Known secondary structure (DSSP) TTS
S

STT
TT

 .........640.........650.........660.........670.........680.........690.........700
Sequence KEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAA
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Known secondary structure (DSSP) TTT

TT





SS

SS

STT
 .........710.........720.........730.........740.........750.........760.........770
Sequence LVVEPTSDGNYVTKQELKQLTDEEKYRDCERFKCPCPTCGTENIYDNVFDGSGTDMEPSLYRCSNIDCKA
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Known secondary structure (DSSP)
TTS




TTTS


TTT


SSS
GGG
TTTS
SSSS


 .........780.........790.........800.........810.........820.........830.........840
Sequence SPLTFTVQLSNKLIMDIRRFIKKYYDGWLICEEPTCRNRTRHLPLQFSRTGPLCPACMKATLQPEYSDKS
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Known secondary structure (DSSP)
GGGGTT



TTT





S
B
SSSBB
TTTSSSBSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence LYTQLCFYRYIFDAECALEKLTTDHEKDKLKKQFFTPKVLQDYRKLKNTAEQFLSRSGYSEVNLSKLFAG
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Known secondary structure (DSSP) TT



T

T
GGG


TTT
 .....
Sequence CAVKS
Predicted secondary structure


SS confidence




Known secondary structure (DSSP)

S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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