PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c8csoB_

Fold library id	PDB Header	Molecule	Title
c8csoB_	2.60	PDB header: lyase	Chain: B: PDB Molecule: orotidine 5'-phosphate decarboxylase;

Links to external resources
Added to library: Tue Jun 21 20:00:17 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence H H M V V A L D Y D N R D K A L A F V D R I D P R D C R L K V G K E M F T L L G P Q F V R D L H Q R G F E V F L D L K F H D I P N T T A R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S
T T T
T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V A A A A E L G V W M V N V H A S G G A R M M T A A R E A L L P F G K D A P L L I A V T V L T S M E S S D L Q D L G I T L S P A D Y A A K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S G G G
T G G G G G G S
S
T T
T T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A A L T Q R C G L D G V V C S A Q E A V R F K H E L G Q A F K L V T P G I R P Q G S D A G D Q R R I M T P E Q A Q E A G V D Y M V I G R P V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
G G G
S S S
B
T T
T T
S
B
T T
S

. . . . . . . . . 220 . . . . . . . . .

Sequence T Q S A D P A A T L R A I N D S L R K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	H	H	M	V	V	A	L	D	Y	D	N	R	D	K	A	L	A	F	V	D	R	I	D	P	R	D	C	R	L	K	V	G	K	E	M	F	T	L	L	G	P	Q	F	V	R	D	L	H	Q	R	G	F	E	V	F	L	D	L	K	F	H	D	I	P	N	T	T	A	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S										T	T	S		T	T	T														T										T	T											S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	A	A	A	A	E	L	G	V	W	M	V	N	V	H	A	S	G	G	A	R	M	M	T	A	A	R	E	A	L	L	P	F	G	K	D	A	P	L	L	I	A	V	T	V	L	T	S	M	E	S	S	D	L	Q	D	L	G	I	T	L	S	P	A	D	Y	A	A	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T		S						G	G	G												T	G	G	G	G	G	G	S								S		T	T								T	T	T			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	A	L	T	Q	R	C	G	L	D	G	V	V	C	S	A	Q	E	A	V	R	F	K	H	E	L	G	Q	A	F	K	L	V	T	P	G	I	R	P	Q	G	S	D	A	G	D	Q	R	R	I	M	T	P	E	Q	A	Q	E	A	G	V	D	Y	M	V	I	G	R	P	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T		S						G	G	G										S	S	S							B			T	T				T	T			S		B								T	T		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence	T	Q	S	A	D	P	A	A	T	L	R	A	I	N	D	S	L	R	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	S	S	S