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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8c4uA_

Fold library idPDB HeaderMoleculeTitle
c8c4uA_3.36PDB header: viral proteinChain: A: PDB Molecule: rna-directed rna polymerase l;


Added to library: Sat Jun 10 08:51:40 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YIPDYKGMEPIGANIEDLVDYSKDWLSRARNFSFFEVKGTAVFECFNSNEANHCQRYPMSRKPRNFLLIQ
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TS



SS

TTTS
SS
B


SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence CSLITSYKPATTLSDQIDSRRACSYILNLIPDTPASYLIHDMAYRYINLTREDMINYYAPRIQFKQTQNV
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Known secondary structure (DSSP)

S





SS


ST

TT

STT



SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence REPGTFKLTSSMLRAESKAMLDLLNNQIESLNIASHIVQSESVSLITKILSDLELNITTVLDKFFQNETQ
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Known secondary structure (DSSP)
STT
B


GGGS
T




TTS
B


 .........220.........230.........240.........250.........260.........270.........280
Sequence KYLIDVLKKTTAWHIGHLIRDITESLIAHSGLKRSKYWSLHSYNNGNVILFILPSKSLEVAGSFIRFITV
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Known secondary structure (DSSP) TTSBTSTTTTTSBTTTT




TTSSS

 .........290.........300.........310.........320.........330.........340.........350
Sequence FRIGPGLVDKDNLDTILIDGDSQWGVSKVMSIDLNRLLALNIAFEKALIATATWFQYYTEDQGQFPLQYA
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Known secondary structure (DSSP) SSS

GGGTT


TSS


 .........360.........370.........380.........390.........400.........410.........420
Sequence IRSVFANHFLLAICQKMKLCAIFDNLRYLIPAVTSLYSGFPSLIEKLFERPFKSSLEVYIYYNIKSLLVA
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Known secondary structure (DSSP)


SS
S


B
 .........430.........440.........450.........460.........470.........480.........490
Sequence LAQNNKSGVYPSFMSRIVYKHYRSLISEVTTCFFLFEKGLHGNMNEEAKIHLETVEWALKFREKEEKYGE
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Known secondary structure (DSSP) T





SSSS
SSTTTTS
S

S
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence SLVENGYMMWELRANAELAEQQLYCQDAIELAAIELNKVLATKSSVVANSILSKNWEEPYFSQTRNISLK
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Known secondary structure (DSSP)
B
S


STT

BTTTSSSSSBTT
STTTSSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence GMSGQVQEDGHLSSSVTIIEAIRYLSNSRHNPSLLKLYEETREQKAMARIVRKYQRTEADRGFFITTLPT
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Known secondary structure (DSSP)
SSSSTSSS

BTSSS



SSSS


 .........640.........650.........660.........670.........680.........690.........700
Sequence RCRLEIIEDYYDAIAKNISEEYISYGGEKKILAIQGALEKALRWASGESFIELSKFIRMKRKLMYVSADA
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Known secondary structure (DSSP) TTSSSB
SSS
TTSS


B
 .........710.........720.........730.........740.........750.........760.........770
Sequence TKWSPGDNSAKFRRFTSMLHNGLPNNKLKNCVIDALKQVYKTDFFMSRKLRNYIDSMESLDPHIKQFLDF
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Known secondary structure (DSSP) S
SSTT

TT


S
SSTTTS

T
SS

TTTTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence FPDGHHGEVKGNWLQGNLNKCSSLFGVAMSLLFKQVWTNLFPELDCFFEFAHHSDDALFIYGYLEPVDDG
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Known secondary structure (DSSP)
SSSSS


TTTT
SSS


TTSGGG
 .........850.........860.........870.........880.........890.........900.........910
Sequence TDWFLFVSQQIQAGHLHWFSVNTEMWKSMFNLHEHILLLGSIKISPKKTTVSPTNAEFLSTFFEGCAVSI
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Known secondary structure (DSSP) T
GGGGGSSS
TT

B
SSS
SSTTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence PFVKILLGSLSDLPGLGYFDDLAAAQSRCVKALDLGASPQVAQLAVALCTSKVERLYGTAPGMVNHPAAY
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Known secondary structure (DSSP)

GGGTS



S
T

T
STTSTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LQVKHTDTPIPLGGNGAMSIMELATAGIGMSDKNLLKRALLGYSHKRQKSMLYILGLFKFLMKLGQFSFI
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Known secondary structure (DSSP) TS
SSSS
GGG






T
SST





SS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence GVQWKIFTPKSEFEFADMYTSKFLELWSSQHVTYDYIIPKGRDNLLIYLVRKLNDPSIVTAMTMQSPLQL
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Known secondary structure (DSSP)








SS

TTTTSS
SSGGGTS


S


STT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence RFRMQAKQHMKVCRLDGEWVTFREVLAAANSFAENYSATSQDMDLFQTLTSCTFSKEYAWKDFLNGIHCD
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Known secondary structure (DSSP) SSSSS



SS



T



GGGTT


 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence VIPTKQVQRAKVARTFTAVIGYKFAVTVEEMSDVLDTARVVIVQGNVEGTAEAICRYWLKSMSLVKTIRV
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Known secondary structure (DSSP)







T

S

SS

S
TTTTSSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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