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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8c4tA_

Fold library idPDB HeaderMoleculeTitle
c8c4tA_3.23PDB header: viral proteinChain: A: PDB Molecule: rna-directed rna polymerase l;


Added to library: Sat Jun 10 08:50:45 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YIPDYKGMEPIGANIEDLVDYSKDWLSRARNFSFFEVKGTAVFECFNSNEANHCQRYPMSRKPRNFLLIQ
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Known secondary structure (DSSP)













TS



SS

S
B
SS
B


SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence CSLITSYKPATTLSDQIDSRRACSYILNLIPDTPASYLIHDMAYRYINLTREDMINYYAPRIQFKQTQNV
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Known secondary structure (DSSP)
SS





TS


ST

TT

TTT



SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence REPGTFKLTSSMLRAESKAMLDLLNNQIESLNIASHIVQSESVSLITKILSDLELNITTVLDKFFQNETQ
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Known secondary structure (DSSP) SSTT
B


STT

T



B

TTS
B


 .........220.........230.........240.........250.........260.........270.........280
Sequence KYLIDVLKKTTAWHIGHLIRDITESLIAHSGLKRSKYWSLHSYNNGNVILFILPSKSLEVAGSFIRFITV
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Known secondary structure (DSSP) TTSBTSTTTTTSBTTTT




TTSTT

 .........290.........300.........310.........320.........330.........340.........350
Sequence FRIGPGLVDKDNLDTILIDGDSQWGVSKVMSIDLNRLLALNIAFEKALIATATWFQYYTEDQGQFPLQYA
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Known secondary structure (DSSP) SSS

TTT
STT



TSS


 .........360.........370.........380.........390.........400.........410.........420
Sequence IRSVFANHFLLAICQKMKLCAIFDNLRYLIPAVTSLYSGFPSLIEKLFERPFKSSLEVYIYYNIKSLLVA
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Known secondary structure (DSSP)


TSS
TSS


B
 .........430.........440.........450.........460.........470.........480.........490
Sequence LAQNVYPSFMSRIVYKHYRSLISEVTTCFFLFEKGLHGNMNEEAKIHLETVEWALKFREKEEKYGESLVE
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Known secondary structure (DSSP)


SSSS
SSTS
S

S
SSTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence NGYMMWELRANAELAEQQLYCQDAIELAAIELNKVLATKSSVVANSILSKNWEEPYFSQTRNISLKGMSG
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Known secondary structure (DSSP)
B
S


STT

BTTTSSSSSBSTTSS
S
 .........570.........580.........590.........600.........610.........620.........630
Sequence QVQEDGHLSSSVTIIEAIRYLSNSRHNPSLLKLYEETREQKAMARIVRKYQRTEADRGFFITTLPTRCRL
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Known secondary structure (DSSP)
TTSS
SSS

BTTTS



SSSS


 .........640.........650.........660.........670.........680.........690.........700
Sequence EIIEDYYDAIAKNISEEYISYGGEKKILAIQGALEKALRWASGESFIELSFIRMKRKLMYVSADATKWSP
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Known secondary structure (DSSP) TSSSB
SSS
TTSS






BS
TTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence GDNSAKFRRFTSMLHNGLPNNKLKNCVIDALKQVYKTDFFMSRKLRNYIDSMESLDPHIKQFLDFFPDGH
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Known secondary structure (DSSP) T

T


S
SSSTS

TTSS

TTSSSSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence HGEVKGNWLQGNLNKCSSLFGVAMSLLFKQVWTNLFPELDCFFEFAHHSDDALFIYGYLEPVDWFLFVSQ
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Known secondary structure (DSSP) S


TTTSS
TTS

TT


 .........850.........860.........870.........880.........890.........900.........910
Sequence QIQAGHLHWFSVNTEMWKSMFNLHEHILLLGSIKISPKKTTVSPTNAEFLSTFFEGCAVSIPFVKILLGS
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Known secondary structure (DSSP) TT
GGGGGSSS
TTT

B
SSS
SS
TTTT


 .........920.........930.........940.........950.........960.........970.........980
Sequence LSDLPGLGYFDDLAAAQSRCVKALDLGASPQVAQLAVALCTSKVERLYGTAPGMVNHPAAYLQVKHTDTP
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Known secondary structure (DSSP)



S
T

T
STTSTT
TSS
SSSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence IPLGGNGAMSIMELATAGIGMSDKNLLKRALLGYSHKRQKSMLYILGLFKFLMKLSDETFQFSFIGEFEF
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Known secondary structure (DSSP) GGG






T
STT





S




SS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence ADMYTSKFLELWSSQHVTYDYIIPKGRDNLLIYLVRKLNDPSIVTAMLQLRFRMQAKQHMKVCRLDGEWV
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Known secondary structure (DSSP) TTSS


GGGTS


ST


TTS

TT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence TFREVLAAANSFAENYSATSQDMDLFQTLTSCTAWKDFLNGIHCDVIPTKQVQRAKVARTFTSIPAVIGY
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Known secondary structure (DSSP)
T





S










 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence KFAVTVEEMSDVLDTAKFPDSLSVDLKTMKDGVYRESLPDVMKRIARVVIVQGNVEGTAEAICRYWLKSM
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Known secondary structure (DSSP) T

SSSSSS






SS


STTT
 ........
Sequence SLVKTIRV
Predicted secondary structure


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Known secondary structure (DSSP) SSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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