PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c8c2oB_

Fold library id	PDB Header	Molecule	Title
c8c2oB_	2.35	PDB header: hydrolase	Chain: B: PDB Molecule: n-acetylmuramoyl-l-alanine amidase amia;

Links to external resources
Added to library: Sat Jun 17 13:22:31 2023

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K R V V V L D P G H G G I D T G A I G R N G S K E K H V V L A I A K N V R S I L R N H G I D A R L T R S G D T F I P L Y D R V E I A H K H G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B T T B
B
T T
B T T
S
S S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A D L F M S I H A D G F T N P K A A G A S V F A L S N R G A S S A M A K Y L S E R E N R A D E V A G K K A T D K D H L L Q Q V L F D L V Q T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S T T
S B
S S
S S T T T
S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D T I K N S L T L G S H I L K K I K P V H K L H S R N T E Q A A F V V L K S P S V P S V L V E T S F I T N P E E E R L L G T A A F R Q K I A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
B S S S S
G G G
S S S
T T S T S

. . . . . . . . . 220 . . . . . .

Sequence T A I A E G V I S Y F H W F D N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	R	V	V	V	L	D	P	G	H	G	G	I	D	T	G	A	I	G	R	N	G	S	K	E	K	H	V	V	L	A	I	A	K	N	V	R	S	I	L	R	N	H	G	I	D	A	R	L	T	R	S	G	D	T	F	I	P	L	Y	D	R	V	E	I	A	H	K	H	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											B	T	T	B				B		T	T			B																			T	T						S		S	S	S															T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	D	L	F	M	S	I	H	A	D	G	F	T	N	P	K	A	A	G	A	S	V	F	A	L	S	N	R	G	A	S	S	A	M	A	K	Y	L	S	E	R	E	N	R	A	D	E	V	A	G	K	K	A	T	D	K	D	H	L	L	Q	Q	V	L	F	D	L	V	Q	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S											S	S	T	T			S	B							S	S			S	S												T					T	T			S		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	T	I	K	N	S	L	T	L	G	S	H	I	L	K	K	I	K	P	V	H	K	L	H	S	R	N	T	E	Q	A	A	F	V	V	L	K	S	P	S	V	P	S	V	L	V	E	T	S	F	I	T	N	P	E	E	E	R	L	L	G	T	A	A	F	R	Q	K	I	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T	T	S		B	S	S	S	S							G	G	G			S	S	S										T	T	S								T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	T	A	I	A	E	G	V	I	S	Y	F	H	W	F	D	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)