Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8bmwK_

Fold library idPDB HeaderMoleculeTitle
c8bmwK_3.50PDB header: rna binding proteinChain: K: PDB Molecule: crispr-associated protein cas10 (type iii-d);


Added to library: Sat Mar 4 10:00:35 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MIRGKLLLPEKKVVFINESEVQSLRKDVVDALKVFSSLACELADNNETKATNIFADLISMIYKLPMLISY
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP)


TTTT

TS
S

TTTS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence VPSDKLSTPHEYFFAYIVFRHLVEDSMPSNDIAKLLEILEEKKRDEIKEVLDYARTLRKIYEKLLYVPAD
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) S
BSS

STTT
SS



S
S

TTSBS
 .........150.........160.........170.........180.........190.........200.........210
Sequence TRPGYNFTSLASHLQLSSILVWLLQKGSVDLNYLRISALLHDIGKLFNPTNHVSESIKILDEVIEGSECL
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP)
STTS
SSB

TT

S
STT
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence KTNLSRVKSLVEQHHAPLETILNDADRLAASTDRFSEIVKGALNNTKIGECYSLCYGRDVRTKECMECLE
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)
S
SSS



TT
S

SS
SSTTTTSSSS

 .........290.........300.........310.........320.........330.........340.........350
Sequence EYGEETYSEESKRLYDVISNSVVSQKVEGNAIGYLVYIDFPGIQRFITSFPKLREMSFASFLVDFVTSIY
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP)
T






SS

S

T

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence SFIVLDQAYYERTGKKSRIPAEALLSGYGGHSYIIVRSDFGSKDEVKAWLESVSSSALSKLGIRLDVKVA
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) TSS



GGGB


SSS
TTS

TTTTT


 .........430.........440.........450.........460.........470.........480.........490
Sequence DFAYENYVRNYKEVYEDMMSKSYERYLIRDEGKVYSYGLHRVCDNCGIRPAVNRSDDGEYLCETCNLVRD
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP) SS
B

TT









STT
S


S

SS

S

BTTBS


 .........500.........510.........520.........530.........540.........550.........560
Sequence LSKNRGFIAKYKSKYTLYEEQRIEISPKEDIKFKLDKNQDPTSYAMEIIAGYRTTSDSRYIALIKADGNN
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP) SST


SSS







TTS
TTTTT
SSSS



SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence AGKIFGNTVTFSEYVDKSFRLDFGVKKMFYDTLLDIMRASSDESIKKDLVSRILLGVLYLGGDDIMLLSP
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) S
SS
SSS
TBS

STT


B
 .........640.........650.........660.........670.........680.........690.........700
Sequence SAIAVPFAVKMFKRSLEYTGFTFKVGIISVKPDHPVQFAYGAVNALMEESKIHTGEKSSIGVLVFSSTLA
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) TTTTTT



TTS
S

SS
SS

SSS

 .........710.........720.........730.........740.........750.........760.........770
Sequence SEGVVKSDLKNYRKEKESFLVVSNDVDDVERLLNLMELDDFGKLMELYWNPEEGRKVIRDKIRSLERFVN
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP)
T

SSS


STT
SS
 .........780.........790.........800.........810.........820.........
Sequence YADTHDFYNTLAYLIRSKAKSEENSLIKRIIDLTIKGRDDFVFPLYDYYFILKSIRVGI
Predicted secondary structure








SS confidence


























































Known secondary structure (DSSP) S
S

TT
TT

S

S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D