Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8bfiC_

Fold library idPDB HeaderMoleculeTitle
c8bfiC_3.00PDB header: rna binding proteinChain: C: PDB Molecule: ccr4-not transcription complex subunit 11;


Added to library: Sat Dec 31 10:48:16 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPSAAQRLTALYL
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)



SS


GGG
TTTS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence LWEMYRTEPLAANPFAASFAHLLNPAGFLPPITPPEKFFLSQLMLAPPRELFKKTPRQIALMDVGNMGQS
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP) TTTTS
GGGSTTS








S


GGGGGS
T


GGG


 .........150.........160.........170.........180.........190.........200.........210
Sequence VDISGLQLALAERQSELPTQSKASFPSILSDPDPDSSNSGFDSSVASQITEALVSGPKPPIESHFRPEFI
Predicted secondary structure


















































SS confidence





































































Known secondary structure (DSSP)


TTS
T






TTSS






SSS
GGG





 .........220.........230.........240.........250.........260.........270.........280
Sequence RPPPPLHICEDELAWLNPTEPDHAIQWDKSMCVKIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTP
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP)








SS
S














S
SS


TTS



STTT

T
 .........290.........300.........310.........320.........330.........340.........350
Sequence AKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCIS
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) TTTT
TTTSS
TS


S


TT
 .........360.........370.........380.........390.........400.........410
Sequence TCEQIKDKYMQNRLVRLVCVFLQSLIRNKIIDLFIEVQAFCIEFSRIREAAGLFRLLKTL
Predicted secondary structure











SS confidence



























































Known secondary structure (DSSP) T


TSS


TTTST


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D