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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8bfiA_

Fold library idPDB HeaderMoleculeTitle
c8bfiA_3.00PDB header: rna binding proteinChain: A: PDB Molecule: ccr4-not transcription complex subunit 1;


Added to library: Sat Dec 31 10:49:55 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GGRSNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKDFHQT
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Known secondary structure (DSSP)






TTTTS

TTTSTTS







TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence QFLIQECALLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLKLSKVQEVIFGLALLNSSSSDL
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Known secondary structure (DSSP) TTSTTS

SS

S



TTTT

TT
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence RGFAAQFIKQKLPDLLRSYIDQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQE
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Known secondary structure (DSSP)





TT

TT
TTTTTS

S
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence RCPVVLAPLLYPEKRDILDRILPDSKTESSLADFQEVIEECRNIIVQFGVREVTAAQVARVLGMMARTHS
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Known secondary structure (DSSP) T

TTT
TT

S



SS







SS







TTTSSSSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence GLTDGIPLQWNVEVLIDVLKELNPSLNFKEVTYELDHPGFQIRDSKGLHNVVYGVQRGLGEVFPVDLIYR
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TT


TTTS
TT

TT

TT



S




S
 .........360.........370.........380.........390.........400.........410.........420
Sequence PWKHAEGQLSFIQHSLINPEIFCFADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYE
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Known secondary structure (DSSP)

SS
TTT

TTTS


B


SS
SS


TTSSSTTGGGBTTTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence QVKQLFSFPIKHCPDLVLALLQINTSWHTLRHELISTLPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIH
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Known secondary structure (DSSP) T






S



GGGSS
TTTSS




 .........500.........510.........520.........530.........540.........550.........560
Sequence AAEWYMRGEQYDQAKLSRILDVAQDLKALSLLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREHGEPF
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Known secondary structure (DSSP)

TSTT

T



TTSS
TTSS
 .........570.........580.........590.
Sequence IQACMTFLKRRLPPETLVTMLACLQACAGSV
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Known secondary structure (DSSP)


TTT
-


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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