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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8bbgC_

Fold library idPDB HeaderMoleculeTitle
c8bbgC_3.50PDB header: transport proteinChain: C: PDB Molecule: intraflagellar transport protein 122 homolog;


Added to library: Sat Dec 24 10:24:00 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MRAVLTWRDKAEHCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFAS
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Known secondary structure (DSSP)


SS

TTSSTTTTT




SS

TTSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GSADKSVIIWTSKLEGILKYTHNDAIQCVSYNPITHQLASCSSSDFGLWSPEQKSVSKHKSSSKIICCSW
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Known secondary structure (DSSP) TTSTTS



SS

TTT

SSB

BB
TT
S

B

B
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence TNDGQYLALGMFNGIISIRNKNGEEKVKIERPGGSLSPIWSICWNPSSRWESFWMNRENEDAEDVIVNRY
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Known secondary structure (DSSP)
TTSSTTSTTS

TTGGGS



SGGGGTT










SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence IQEDDNLEERNDILAVADWGQKVSFYQLSGKQIGKDRALNFDPCCISYFTKGEYILLGGSDKQVSLFTKD
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Known secondary structure (DSSP)





GGG


TTTTTS

SS

TTSSTTSSTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence GVRLGTVGEQNSWVWTCQAKPDSNYVVVGCQDGTISFYQLIFSTVHGLYKDRYAYRDSMTDVIVQHLITE
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Known secondary structure (DSSP) S



SS

TTSSTTS





TTTTTTTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence QKVRIKCKELVKKIAIYRNRLAIQLPEKILIYELYSEDLSDMHYRVKEKIIKKFECNLLVVCANHIILCQ
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Known secondary structure (DSSP)

SS


TT
SS
SSS
TT








S
SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence EKRLQCLSFSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQILKIFVDNLFAIVLLKQATAVRCL
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Known secondary structure (DSSP) TTTTS

SS



STTS
TTSTT
SS
SS

S
 .........500.........510.........520.........530.........540.........550.........560
Sequence DMSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKASTFPVHRQKL
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Known secondary structure (DSSP)
TTSS
SSS
TTTTS

S
SSSTTTTTTS

 .........570.........580.........590.........600.........610.........620.........630
Sequence QGFVVGYNGSKIFCLHVFSISAVEVPQSAPMYQYLDRKLFKEAYQIACLGVTDTDWRELAMEALEGLDFE
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Known secondary structure (DSSP)
STT
SSSB



TTT
TT


TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence TAKKAFIRVQDLRYLELISSIEERKKRGETNNDLFLADVFSYQGKFHEAAKLYKRSGHENLALEMYTDLC
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Known secondary structure (DSSP) T
TTT


TT
TT
TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence MFEYAKDFLGSGDPKETKMLITKQADWARNIKEPKAAVEMYISAGEHVKAIEICGDHGWVDMLIDIARKL
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Known secondary structure (DSSP)
T


SSTT
TT
T
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence DKAEREPLLLCATYLKKLDSPGYAAETYLKMGDLKSLVQLHVETQRWDEAFALGEKHPEFKDDIYMPYAQ
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Known secondary structure (DSSP)
TT
TT
T
TT

GGG
 .........850.........860.........870.........880.........890.........900.........910
Sequence WLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVAESRFNDAAYYYWMLSMQCLDIAQDPAQKDTMLG
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Known secondary structure (DSSP) TT
TT
TT
TTSGGG
 .........920.........930.........940.........950.........960.........970.........980
Sequence KFYHFQRLAELYHGYHAIHRHTEDPFSVHRPETLFNISRFLLHSLPKDTPSGISKVKILFTLAKQSKALG
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Known secondary structure (DSSP) SSS
SS


SS

TT

T
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence AYRLARHAYDKLRGLYIPARFQKSIELGTLTIRAKPFHDSEELVPLCYRCSTNNPLLNNLGNVCINCRQP
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Known secondary structure (DSSP) BTTS


TS
SSB
GGGS
TTTT

SS
TT
SB
TTT

B
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence FIFSASSYDVLHLVEFYLEEGITDEEAISLIPFTAKLSFEQGGSEFVPVVVSRLVLRSMSRRDVLIKRWP
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Known secondary structure (DSSP)

B
TTT

B
S
TT



STT
SS



S
TTT


 .........1130.........1140.........1150.........1160.........1170....
Sequence PPLRWQYFRSLLPDASITMCPSCFQMFHSEDYELLVLQHGCCPYCRRCKDDPGP
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Known secondary structure (DSSP) TTS

S
TTS

TTT

SB
TTT

BTTS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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