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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8bbeC_

Fold library idPDB HeaderMoleculeTitle
c8bbeC_3.50PDB header: transport proteinChain: C: PDB Molecule: intraflagellar transport protein 122 homolog;


Added to library: Sat Dec 24 10:28:27 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MRAVLTWRDKAEHCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFAS
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Known secondary structure (DSSP)


SS

TTSSTTTTT




SS

TTSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GSADKSVIIWTSKLEGILKYTHNDAIQCVSYNPITHQLASCSSSDFGLWSPEQKSVSKHKSSSKIICCSW
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Known secondary structure (DSSP) TTSTTS



SS

TTT

SSB

BB
TT
S

B

B
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence TNDGQYLALGMFNGIISIRNKNGEEKVKIERPGGSLSPIWSICWNPSSRWESFWMNRENXXXXXXDDNLE
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Known secondary structure (DSSP)
TTSSTTSTTS

TTGGGS



SGGGGTT











GG
 .........220.........230.........240.........250.........260.........270.........280
Sequence ERNDILAVADWGQKVSFYQLSGKQIGKDRALNFDPCCISYFTKGEYILLGGSDKQVSLFTKDGVRLGTVG
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Known secondary structure (DSSP) G


TTTTTS

SS

TTSSTTSSTTS

 .........290.........300.........310.........320.........330.........340.........350
Sequence EQNSWVWTCQAKPDSNYVVVGCQDGTISFYQLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCK
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Known secondary structure (DSSP)

SS

TTSSTTS





TTTTTTTTT


S
 .........360.........370.........380.........390.........400.........410.........420
Sequence ELVKKIAIYRNRLAIQLPEKILIYELYSEDLSDMHYRVKEKIIKKFECNLLVVCANHIILCQEKRLQCLS
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Known secondary structure (DSSP) S


TT
SS
SSS
TT








S
SSTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence FSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQILKIFVDNLFAIVLLKQATAVRCLDMSASRKK
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Known secondary structure (DSSP) TTS

SS



STTS
TTSTT
SS
SS

S
TTSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKASTFPVHRQKLQGFVVGYN
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Known secondary structure (DSSP)
SSS
TTTTS

S
SSSTTTTTTS


S
 .........570.........580.........590.........600.........610.........620.........630
Sequence GSKIFCLHVFSISAVEVPQSAPMYQYLDRKLFKEAYQIACLGVTDTDWRELAMEALEGLDFETAKKAFIR
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Known secondary structure (DSSP) TT
SSSB



TTT
TT


TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence VQDLRYLELISSIEERKKRGETNNDLFLADVFSYQGKFHEAAKLYKRSGHENLALEMYTDLCMFEYAKDF
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Known secondary structure (DSSP) T
TTT


TT
TT
TT
GGG
 ..
Sequence LG
Predicted secondary structure
SS confidence

Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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