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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8atoA_

Fold library idPDB HeaderMoleculeTitle
c8atoA_UNKPDB header: Blank PDB headerPDB COMPND:


Added to library: Sat Mar 11 09:56:51 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence WLVLRDGCMHCDADGLHSLSYHPALNAILAVTSRGTIKVIDGTSGATLQASALSAKPGGQVKCQYISAVD
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Known secondary structure (DSSP)












S

SS




SSS





SS






SSS


S





SSTT


TTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence KVIFVDDYAVGCRKDLNGILLLDTALQTPVSKQDDVVQLELPVTEAQQLLSACLEKVDISSTEGYDLFIT
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Known secondary structure (DSSP)
SSS



GGG


STTTT



SSTTS






TS


TTSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence QLKDGLKNTSHETAANHKVAKWATVTFHLPHHVLKSIASAIVNELKKINQNVAALPVASSVMDRLSYLLP
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Known secondary structure (DSSP) TTTTT
SS






S



TS
G
 .........220.........230.........240.........250.........260.........270.........280
Sequence SARPELGVGPGRSVDRSLMYSEANRRETFTSWPHVGYRWAQPDPMAQAGFYHQPASSGDDRAMCFTCSVC
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Known secondary structure (DSSP) GG





STT



SSGGGSTTT
SS
TTTTSSS








SS
SS

SSS

 .........290.........300.........310.........320.........330.........340.........350
Sequence LVCWEPTDEPWSEHERHSPNCPFVKGEHTQNVPLSVTLATSPAQFPCTDGTDRISCFGSGSCPHFLAAAT
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Known secondary structure (DSSP)



TT


TTST

SS


TT




S
SS

S






TT
TTS




 .........360.........370.........380.........390.........400.........410.........420
Sequence KRGKICIWDVSKLMKVHLKFEINAYDPAIVQQLILSGAMEVSLDITALSILQQNIPFPCLLAGGLLTYKS
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Known secondary structure (DSSP) TTS





SSS










S




















S





B






 .........430.........440.........450.........460.........470.........480.........490
Sequence PAPLVRRTLPVLLLYSIKESDPKPGTLVQCLRLPKFAEEENLCIDSITPCADGIHLLVGLRTCPSGGYLV
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Known secondary structure (DSSP)










B



SS




TT








TT
B


B


SSSSS

B

B





B

 .........500.........510.........520.........530.........540.........550.........560
Sequence LYKMNYATRIVTLEEEPIKIQHIKDPQDTITSLILLPPDILDNREDDCTLGHLVITTQGGYVKILDLSNF
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Known secondary structure (DSSP)






SSS



SS




B
S

TT

S





TTTS






TT

TTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence EILAKVEPPKKEGTEEQDTFVSVIYCSGTDRLCACTKGGELHFLQISGVDLLVDQPFTLEILTSLVELTR
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Known secondary structure (DSSP)




SSS
S







B
TTT
SB



TTS











SSSS


GGG
 .........640.........650.........660.........670.........680.........690.........700
Sequence FETLTPRFSATVPPCWVEVQQEQQQRRHPQHLHQQHHGDAAQHTRTWKLQTDSNSWDEHVFELVLPKACM
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Known secondary structure (DSSP)

S





TTT


TTSTTT
SSTTSSSS




SS

SS







SS
S
 .........710.........720.........730.........740.........750.........760.........770
Sequence VGHVDFKFVLNSNITNIPQIQVTLLKNKACPFLEDHKEDILCGPVWLASGLDLSGHAGMLTLTSPKLVKG
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Known secondary structure (DSSP)



TT

S














TTTTTGGG

S



STTS

TTSS






 .........780.........790.........800.........810.........820.........830.........840
Sequence MAGGKYRSFLIHVKALRGCDLLQEVSVTIRRFKKTSISKERVQRCAMLQFSEFHEKLLNTLCRKTDDGQI
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Known secondary structure (DSSP) SSSSS











TTTT




SSTT
S
BTTBS
 .........850.........860.........870.........880.........890.........900.........910
Sequence TEHAQSLVLDTLCWLAGVHSNGPGSSKEGNENLLSKTRKFLSDIVRVCFFEAGRSIAHKCARFLALCISN
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Known secondary structure (DSSP)
TS
TTTTTTTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence GKCDPCQPAFGPVLLKALLDNMSFLPAATTGGSVYWYFVLLNYVKDEDLAGCSTACASLLTAVSRQLQDR
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Known secondary structure (DSSP)
TTS

STGGGSTT


TTT
STT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LTPMEALLQTRYGLYSSPFDPVLFDLEMSGSSCKNVYNSSIGVQSDLQPPPHQSIIIERMHSGARRFVTL
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Known secondary structure (DSSP)




S
SS






BSSS
B
SSS
B





S





SSS



 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence DFGRPILLTDVLIPTCGDLASLSIDIWTLGEEVDGRRLVVATDISTHSLILHDLIPPPVCRFMKITVIGR
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Known secondary structure (DSSP)


SS
S


SS
TTSS


S
TTTS



SS





 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence YGSTNARAKIPLGFYYGHTYILPPEIDQHLAMMVALQEDIQCRYNLACHRLETLLQSIDLPPLNSANNAQ
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Known secondary structure (DSSP) TT


S








STTT




S
S
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence YFLRKPDKAVEEDSRVFSAYQDCIQLQLQLNLAHNAVQRLKVALGASRKMLSETSNPEDLIQTSSTEQLR
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Known secondary structure (DSSP) S

TT








SSS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence TIIRYLLDTLLSLLHASVPAVLQSTFHAQACEELFKHLCISGTPKIRLHTGLLLVQLCGGERWWGQFLSN
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Known secondary structure (DSSP)


SSS
TTTS

SSSSTT
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence VLQELYNSEQLLIFPQDRVFMLLSCIGQRSLSNSGVLESLLNLLDNLLSPLQPEGVLDIPMISWVVMLVS
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Known secondary structure (DSSP) S
TT





TTTTSTTTS






 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence RLLDYVATFTLAHERCISVVQKLVLFLLSMDFTCHADLLLFVCKVLARIANATRPTIHLCEIVNEPQLER
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Known secondary structure (DSSP)





TT

TTS
SSS




 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence LLLLLVGTDFNRGDISWGGAWAQYSLTCMLQDILAGELQQAELMLKMMSTLEADSILQALTNLIIQLSSV
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Known secondary structure (DSSP) BTTT
BTTB
SS









S
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence PMLNVCFNKLFSMLQVHHVQLESLLQLWLTLSLNSFLYNANRIPVISLNQASITSFLTVLAWYPNTLLRT
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Known secondary structure (DSSP) TTGGGTSB
T






TT


SS



S


 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence WCLVLHSLTLMTNMQLNSTQESTAHLLVSDPNLIHVLVKFLSGTSPHGTNQHSPQVGPTATQAMQEFLTR
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Known secondary structure (DSSP)











S


SS


SS
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence LQVHLSSTCPQIFSEFLLKLIHILSTERGAFQTGQGPLDAQVKLLEFTLEQNFEVVSVSTISAVIESVTF
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Known secondary structure (DSSP) TT
STT
T
S
TT



S
B
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence LVHHYITCSDKVMSRSGSDSSVGARACFGTRDQLMFDLLKLVNILVQLPLSGNREYSARVSPAYVADLVL
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Known secondary structure (DSSP) T

S


SS




TT


T


BTTTTB







 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence ANQQIMSQILSALGLCNSSAMAMIDAISVGDGLFTILTTLSKKASTVHMMLQPILTYMACGYMGRQGSLA
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Known secondary structure (DSSP)

STTTT



ST
SSTS
GGG


SS
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence TCQLSEPLLWFILRVLDTSDALKAFHDMGGVQLICNNMVTSTRAIVNTARSMVSTIMKFLDSEGIHNFAP
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Known secondary structure (DSSP)




T
STT



S

S





ST
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence LGTITSSSPTAQPAEVLLQATPPHRRARSAAWSYIFLPEEAWCDLTIHLPAAVLLKEIHIQPHLASLATC
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Known secondary structure (DSSP) TS
SSTTS


GGGG
SS


TT
SS
S

TT


TT
GGGS
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence PSSVSVEVSADGVNMLPLSTPVVTSGLTYIKIQLVKAEVASAVCLRLHRPRDASTLGLSQIKLLGLTAFG
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Known secondary structure (DSSP)
SSSSSS

B
SS

TT
SS

SS
S
SSS
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence TTSSATDQVSKTSIGWLRLLHHCLTHISDLEGMMASAAAPTANLLQTCAALLMSPYCGMHSPNIEVVLVK
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Known secondary structure (DSSP) SSSS


SSS
GGGTTSTTS

SSS
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence IGLQSTRIGLKLIDILLRNCAASGSDPTDLNSPLLFGRLNGLSSDSTIDILYQLGTTQDPGTKDRIQALL
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Known secondary structure (DSSP) SS
T

S
TT

TTSSSS



SS
TT




STT
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence KWVSDSARVAAMKVEYGLLMPSPSHLHCVAAILWHSYELLVEYDLPALLDQELFELLFNWSMSLPCNMVL
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Known secondary structure (DSSP)



TTTSS

S

SS
S
S
TT
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence KKAVDSLLCSMCHVHPNYFSLLMGWMGITLALTESHLATLASSSQSPEAIKQLLDSGLPSLLVRSLASFC
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Known secondary structure (DSSP)
T





T
STT
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence FSKMPITADLVAPILRFLTEVGNSHIMKDWLGGSEVNPLWTALLFLLCHGLTTQQRTAIENATVAFFLQC
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Known secondary structure (DSSP)






TTTTTSTSTTT




 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence ISCHPNNQKLMAQVLCELFQTSPQNISGFIRRLFLQLMLEDEKVTMFLQSPCPLYKGRINATSHVIQHPM
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Known secondary structure (DSSP) TT
S




SSSS


SS


TT

SS






GG
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence YGAGHKFRTLHLPVSTTLSDVLDRVSDTPSVPVFHLFHKLLAGQPLPAEMTLAQLLTLLYDRKLPQGYRS
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Known secondary structure (DSSP) G

STTTT
B
TTT



STTTT



TT
BTT

TT
S
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence IDLTVKLGSLLETCPIQSPLQVFAGMGGLALIAERLIPAHSLAAFGLFLRLPGYAEVLLKERKHAQCLLR
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Known secondary structure (DSSP)


TTS




TTT


TSTTTTS
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence LVLGVTDDGEGSHILQSPSANVLPTLPFHVLRSLFSTTPLTTDDGVLLRRMALEIGALHLILVCLSALSH
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Known secondary structure (DSSP) TTS

B
TTS
BGGGSTTTTSGGGS
SSSTT
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence HSPRDVEQALTKQRLEEEHVTCLLQVLASYINPVNALPSVLLELLSQSCLIPAMSSYLRNDSVLDMARHV
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP)




S



S
TTTSS


TT
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence PLYRALLELLRAIASCAAMVPLLLPTSVGTLLAKMKTCVDTYTNRLVPDIQKTAEIVYAATTSLRQANQE
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SS confidence





































































Known secondary structure (DSSP)
TTT



TTT


T
 .
Sequence K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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