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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8areA_

Fold library idPDB HeaderMoleculeTitle
c8areA_1.90PDB header: transport proteinChain: A: PDB Molecule: oligopeptide-binding protein oppa;


Added to library: Sat Feb 25 09:45:56 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GKTTLNINIKTEPFSLHPGLANDSVSGGVIRQTFEGLTRINADGEPEEGMASKIETSKDGKTYTFTIRDG
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Known secondary structure (DSSP)




S

S
SSTTT

S


S
TTS
SS
TTS

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VKWSNGDPVTAQDFEYAWKWALDPNNESQYAYQLYYIKGAEAANTGKGSLDDVAVKAVNDKTLKVELNNP
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Known secondary structure (DSSP)
B
TTS
B


GGG

TTGGGGTTBTTTSS
GGGSSTTBSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence TPYFTELTAFYTYMPINKKIAEKNKKWNTNAGDDYVSNGPFKMTAWKHSGSITLEKNDQYWDKDKVKLKK
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Known secondary structure (DSSP)
TTTTSGGG




TTGGGSSSTT



SSTTT
TT
TTGGG


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence IDMVMINNNNTELKKFQAGELDWAGMPLGQLPTESLPTLKKDGSLHVEPIAGVYWYKFNTEAKPLDNVNI
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Known secondary structure (DSSP)



TS
STTTS


GGGTT


TTSTTTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence RKALTYSLDRQSIVKNVTQGEQIPAMAAVPPTMKGFEDNKEGYFKDNDVKTAKEYLEKGLKEMGLSKASD
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Known secondary structure (DSSP) T

TT
S


SSSS
TTSTT
GGGGT
SS
TT
TT
S
GGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence LPKIKLSYNTDDAHAKIAQAVQEMWKKNLGVDVELDNSEWNVYIDKLHSQDYQIGRMGWLGDFNDPINFL
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Known secondary structure (DSSP) S


S





TT

S
SSSSGGGGT
 .........430.........440.........450.........460.........470.........480.........490
Sequence ELFRDKNGGNNDTGWENPEFKKLLNQSQTETDKTKRAELLKKAEGIFIDEMPVAPIYFYTDTWVQDENLK
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Known secondary structure (DSSP) GGGSSTT
TTT
S





S
S
TT
 .........500........
Sequence GVIMPGTGEVYFRNAYFK
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Known secondary structure (DSSP)

B

TTS

B
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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