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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8alzB_

Fold library idPDB HeaderMoleculeTitle
c8alzB_3.40PDB header: dna binding proteinChain: B: PDB Molecule: activating signal cointegrator 1 complex subunit 3;


Added to library: Sat Mar 11 11:03:32 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence HYPHVYDSQAEAMKTSAFIAGAKMILPEGIQRENNKLYEEVRIPYSEPMPLSFEEKPVYIQDLDEIGQLA
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Known secondary structure (DSSP)


SS








S
S
SSSS



SS






SS














SS




SSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence FKGMKRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMK
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Known secondary structure (DSSP) S






TT

S

S
T
TTTTTS

S


SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence ALAAEMTDYFSRRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRLLIL
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Known secondary structure (DSSP)

TT






SSS






T

SSS
STTS


 .........220.........230.........240.........250.........260.........270.........280
Sequence DEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFFFDGRFRPVP
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Known secondary structure (DSSP)

TTSST


S

S

TT

TTTS

TTTSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence LGQTFLGIKCANKMQQLNNMDEVCYENVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNCGHIPFFFP
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Known secondary structure (DSSP) B








SST



S
GGG
GGGT

 .........360.........370.........380.........390.........400.........410.........420
Sequence TQGHDYVLAEKQVQRSRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPA
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Known secondary structure (DSSP)


SS
STTTT

SSS
T

S
TTS




 .........430.........440.........450.........460.........470.........480.........490
Sequence HAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQRNPIESQF
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Known secondary structure (DSSP) S
TT


TTT
S


TTS
TTT
S
B



TTTSS







 .........500.........510.........520.........530.........540.........550.........560
Sequence LESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLVIEVGRK
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Known secondary structure (DSSP) STTTS

BS
SGGGT


TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence LDKAQMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEE
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Known secondary structure (DSSP) TTTSTTTT
TT



SS

SSSSGGG
S



 .........640.........650.........660.........670.........680.........690.........700
Sequence IEELDTLLSNFCELSTPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRK
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Known secondary structure (DSSP) S

S

TTTTSSTT




 .........710.........720.........730.........740.........750.........760.........770
Sequence RWPTMTYRLLNLSKVIDKRLWGWASPLRQFSILPPHILTRLEEKKLTVDKLKDMRKDEIGHILHHVNIGL
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Known secondary structure (DSSP) T
T

TTS
GGGG
SSS
TT

S
T
 .........780.........790.........800.........810.........820.........830.........840
Sequence KVKQCVHQIPSVMMEASIQPITRTVLRVTLSIYADFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLA
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Known secondary structure (DSSP) TTS





SSSB


S



SS

TTT


 .........850.........860.........870.........880.........890.........900.........910
Sequence LKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPI
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Known secondary structure (DSSP)





B

SS

SSSSTT

TT














SS


G
 .........920.........930.........940.........950.........960.........970.........980
Sequence TALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAP
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Known secondary structure (DSSP) GGGS
TT


SS

TTSS




TTS

TTSB

S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQQVTIL
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Known secondary structure (DSSP)
TTTTSSS



S
T
S

TT

SS

SGGGB
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence IIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPV
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Known secondary structure (DSSP)
GGGGSSSS

SS


S

TTTT
SSSS

STTSSS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence PLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLN
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Known secondary structure (DSSP)


B


STT
TT




SSSTTSSS
TTTT

 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence MDEREMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLV
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Known secondary structure (DSSP) S



SS
TTTTTTT


S
GGGTTTSS


SS

SSS



S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence IIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGV
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Known secondary structure (DSSP)



TTTSS

TT


TTT
SS
B
S







GGG
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence LSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLGDVSHDSVNKFLSHLIEKSLIELELSYC
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Known secondary structure (DSSP) SSS

BGGGSSTGGGT



STT
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence IEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHMNSE
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Known secondary structure (DSSP)
TTTSSB

TT

T

SS

T
GGGTT



SS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence LAKCLPIESNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTV
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Known secondary structure (DSSP) TSSSSS


GGGTT
TT


SSS
S
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence LNITNLIQMVIQGRWLKDSSLLTLPNIENHHLHLFKKWKPIMKGPHARGRTSIESLPELIHACGGKDHVF
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Known secondary structure (DSSP) TS
SSS
GGGGSTT

GGG



SSSSS


S
S


STTT
SSS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence SSMVESELHAAKTKQAWNFLSHLPVINVGISVKGSWDDLVEGHNELSVSTLTADKRDDNKWIKLHADQEY
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Known secondary structure (DSSP) TGGGTTSSS




SS


S


SS


SS
TTTSB

BTT

 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence VLQVSLQRVHFGFHKGKPESCAVTPRFPKSKDEGWFLILGEVDKRELIALKRVGYIRNHHVASLSFYTPE
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Known secondary structure (DSSP)


SSS
S
S
SB


SS
SS

B

TTTT


SS


S
 .........1760.........1770.........1780...
Sequence IPGRYIYTLYFMSDCYLGLDQQYDIYLNVTQAS
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Known secondary structure (DSSP) S

SS
SS


B



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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