PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c8a2qB_

Fold library id	PDB Header	Molecule	Title
c8a2qB_	3.53	PDB header: dna binding protein	Chain: B: PDB Molecule: fanconi anemia complementation group i;

Links to external resources
Added to library: Sat Sep 10 09:48:29 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G D M V T R Q A L R G R E T A A L L K G I F K G S P S G V L R R L Q V Y K H C V S L V E S G D L H V G K V S E I I G L L M L E A R Q L P G H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S S S
S
G G G S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A L A E L A T L F V E V I K R G S L S N G K S L E L F S T V L T A L F K K Q L I N T L C S S K W D P Q C V I H L A N M F R D I P L S G E E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
S
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q F V V E K V L R M F Q E I P P L V Y Q L L L L S A K G S K K T V L E G I I S F F N Q L D K R Q K E L D Q L R H V E G T V I L H I V S A I N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence L D Q D I G E E L I K H L K T E Q Q K D P G K A L C P F S V S L L L S T A V K H R L Q E Q I F D F L K T S I T R S C K D L Q I L Q A S K F L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S T T
T T T T T S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence Q D L C P Q Q Y D V T A V I L E V V K N S A F G W D H V T Q G L V D L G F S L M E S Y E M P A Q Q A C K L G A S I L L E T F K V H E P I R S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
S
S T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence D I L E Q V L N R V L T K A A S P V S H F I D L L S N I V V S A P L V L Q N S S S R V T E T F D N L S F L P I D T V Q G L L R A V Q P L L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S S
T T T T T S T T
S S S
S S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence V S M S V R D S L I L V L Q K A I F S R Q L D A R K A A V A G F L L L L R N F K I L G N E A F C L E I L G S L R R C L S Q Q A D V R L M L Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S
S
G G G S S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence E G F Y D V L R R N S Q L A S S I M E T L L S Q I K Q Y Y L P Q Q D L L P P L K L E G C I M I F L Q E P L A H L L C C I Q H C L A W Y K S T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S
S
G G G G

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence V G F E Q N F E E M L E S V T R R M I K S E L E D F E L D K S A D F S P S S G V G V K N N I Y A I Q V M G I C E V L I E Y N F K I G N F S K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T T S S
S S S S
T T S
T T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence N K F E D V L G L F T C Y N K L S E I L R S F L S M G F V S T L L T A L F R D N A Q S H E E S L A V L R S S T E F M R Y A V S V A L Q K V Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence Q L E E M G Q T D G P D G Q N P E K M F Q N L C K I T R V L L W R Y T S I S I S L L C L E G L L R I F N T M Q Q L Y A A R I P Q F L Q A L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
S S T T
S
S
S T T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence I N V T E K A A F Q I R Q F Q R S L V N Q L S S A E D D F N S K E T Q L L I T I L S T L S K L L D P G S Q Q F L Q F L T W T V K I C K E N A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T S
T T S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence L E D L S C C K G L L T L L F S L H V L Y K S P V S L L R E L A Q D I H A C L G D I D Q D V E I E S R S H F A I V N V K T A A P T V C L L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S
T T S S
S S
T T T T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence L G Q A D K V L E E V D W L I K R L T N Q T Q A L E K G V I L Q L G T L L T V F H E L V Q T A L P A G S C V D S L L R S L S K T Y A I L T S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence L I K H Y I Q A V P G R L E K L V K L S G S H L T P Q C Y S F I T Y V Q N I H S E S L S F A T V M A K V L R D T K P I P N L I F A I E Q Y E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T T

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . .

Sequence K F L I H L S K K S K V N L M Q Y M K L S T S R D F R I N A S M L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
G G G S S
S G G G

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	D	M	V	T	R	Q	A	L	R	G	R	E	T	A	A	L	L	K	G	I	F	K	G	S	P	S	G	V	L	R	R	L	Q	V	Y	K	H	C	V	S	L	V	E	S	G	D	L	H	V	G	K	V	S	E	I	I	G	L	L	M	L	E	A	R	Q	L	P	G	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S	S	S	S																																			S																G	G	G	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	L	A	E	L	A	T	L	F	V	E	V	I	K	R	G	S	L	S	N	G	K	S	L	E	L	F	S	T	V	L	T	A	L	F	K	K	Q	L	I	N	T	L	C	S	S	K	W	D	P	Q	C	V	I	H	L	A	N	M	F	R	D	I	P	L	S	G	E	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T				S																										S				T	T												S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	F	V	V	E	K	V	L	R	M	F	Q	E	I	P	P	L	V	Y	Q	L	L	L	L	S	A	K	G	S	K	K	T	V	L	E	G	I	I	S	F	F	N	Q	L	D	K	R	Q	K	E	L	D	Q	L	R	H	V	E	G	T	V	I	L	H	I	V	S	A	I	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																												S																					T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	L	D	Q	D	I	G	E	E	L	I	K	H	L	K	T	E	Q	Q	K	D	P	G	K	A	L	C	P	F	S	V	S	L	L	L	S	T	A	V	K	H	R	L	Q	E	Q	I	F	D	F	L	K	T	S	I	T	R	S	C	K	D	L	Q	I	L	Q	A	S	K	F	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T																	T	T	S	T	T												T	T	T	T	T	S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	Q	D	L	C	P	Q	Q	Y	D	V	T	A	V	I	L	E	V	V	K	N	S	A	F	G	W	D	H	V	T	Q	G	L	V	D	L	G	F	S	L	M	E	S	Y	E	M	P	A	Q	Q	A	C	K	L	G	A	S	I	L	L	E	T	F	K	V	H	E	P	I	R	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					G	G	G	S		S																																								S	T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	D	I	L	E	Q	V	L	N	R	V	L	T	K	A	A	S	P	V	S	H	F	I	D	L	L	S	N	I	V	V	S	A	P	L	V	L	Q	N	S	S	S	R	V	T	E	T	F	D	N	L	S	F	L	P	I	D	T	V	Q	G	L	L	R	A	V	Q	P	L	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	S			S	S																	T	T					T	T	T	S						T	T		S	S	S		S	S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	V	S	M	S	V	R	D	S	L	I	L	V	L	Q	K	A	I	F	S	R	Q	L	D	A	R	K	A	A	V	A	G	F	L	L	L	L	R	N	F	K	I	L	G	N	E	A	F	C	L	E	I	L	G	S	L	R	R	C	L	S	Q	Q	A	D	V	R	L	M	L	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T		S																			S																		G	G	G	S	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	E	G	F	Y	D	V	L	R	R	N	S	Q	L	A	S	S	I	M	E	T	L	L	S	Q	I	K	Q	Y	Y	L	P	Q	Q	D	L	L	P	P	L	K	L	E	G	C	I	M	I	F	L	Q	E	P	L	A	H	L	L	C	C	I	Q	H	C	L	A	W	Y	K	S	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S																						S	S		S			S		G	G	G	G
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	V	G	F	E	Q	N	F	E	E	M	L	E	S	V	T	R	R	M	I	K	S	E	L	E	D	F	E	L	D	K	S	A	D	F	S	P	S	S	G	V	G	V	K	N	N	I	Y	A	I	Q	V	M	G	I	C	E	V	L	I	E	Y	N	F	K	I	G	N	F	S	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T			T	T	T	S	S			S	S	S	S			T	T	S																													T	T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	N	K	F	E	D	V	L	G	L	F	T	C	Y	N	K	L	S	E	I	L	R	S	F	L	S	M	G	F	V	S	T	L	L	T	A	L	F	R	D	N	A	Q	S	H	E	E	S	L	A	V	L	R	S	S	T	E	F	M	R	Y	A	V	S	V	A	L	Q	K	V	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																					T	T				T	T			S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	Q	L	E	E	M	G	Q	T	D	G	P	D	G	Q	N	P	E	K	M	F	Q	N	L	C	K	I	T	R	V	L	L	W	R	Y	T	S	I	S	I	S	L	L	C	L	E	G	L	L	R	I	F	N	T	M	Q	Q	L	Y	A	A	R	I	P	Q	F	L	Q	A	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	S		S	S	T	T		S																																											S		S	T	T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	I	N	V	T	E	K	A	A	F	Q	I	R	Q	F	Q	R	S	L	V	N	Q	L	S	S	A	E	D	D	F	N	S	K	E	T	Q	L	L	I	T	I	L	S	T	L	S	K	L	L	D	P	G	S	Q	Q	F	L	Q	F	L	T	W	T	V	K	I	C	K	E	N	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								S		T	T																			T	T	S		T	T	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	L	E	D	L	S	C	C	K	G	L	L	T	L	L	F	S	L	H	V	L	Y	K	S	P	V	S	L	L	R	E	L	A	Q	D	I	H	A	C	L	G	D	I	D	Q	D	V	E	I	E	S	R	S	H	F	A	I	V	N	V	K	T	A	A	P	T	V	C	L	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T	S																	S			T	T	S	S										S	S			T	T	T	T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	L	G	Q	A	D	K	V	L	E	E	V	D	W	L	I	K	R	L	T	N	Q	T	Q	A	L	E	K	G	V	I	L	Q	L	G	T	L	L	T	V	F	H	E	L	V	Q	T	A	L	P	A	G	S	C	V	D	S	L	L	R	S	L	S	K	T	Y	A	I	L	T	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																													T					S	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	L	I	K	H	Y	I	Q	A	V	P	G	R	L	E	K	L	V	K	L	S	G	S	H	L	T	P	Q	C	Y	S	F	I	T	Y	V	Q	N	I	H	S	E	S	L	S	F	A	T	V	M	A	K	V	L	R	D	T	K	P	I	P	N	L	I	F	A	I	E	Q	Y	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								T																																T	T	T
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.
Sequence	K	F	L	I	H	L	S	K	K	S	K	V	N	L	M	Q	Y	M	K	L	S	T	S	R	D	F	R	I	N	A	S	M	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	T			G	G	G	S	S												S	G	G	G