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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8a2qA_

Fold library idPDB HeaderMoleculeTitle
c8a2qA_3.53PDB header: dna binding proteinChain: A: PDB Molecule: fancd2;


Added to library: Sat Sep 10 09:52:33 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GVFEELLRTSGIILKVGEGQNEIAVDQTAFQKKLRVALEKHPSYPGVVNEFISGLESHIKDRSQFKNCLL
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Known secondary structure (DSSP)
SS
B

STT


BS
S
GGGSTT


 .........80.........90.........100.........110.........120.........130.........140
Sequence IKLLLGIKILQPAVVTLLLEKIPEFNFPRLIVNQFKWLDGLLDSQDLVKKLMQMLSVSPVPIQHDIITSL
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Known secondary structure (DSSP) T
STT

TT



TTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PEILEDSQQNEVARELSCLLKQGRRLTVPILDALSRLDLDAELLAKVRQSAMTIVPSVKLEDLPVVIKFI
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Known secondary structure (DSSP)

STT
STTS


TTTT

STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence LHNVKAADAVEVISDLRKSLDLSSLFDVIKLAVRFQKDVSEAWIKAIENSTSVSDHKVLDLIVLLLIHST
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Known secondary structure (DSSP)

SST



TGGGS



 .........290.........300.........310.........320.........330.........340.........350
Sequence RKQTEKVLRSKIRLGCMPEQLMQNAFQNHSMVIKDFFPSILSLAQTFLHSAHPAVVSFGSCMYKQAFAVF
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Known secondary structure (DSSP)

T
S


ST
SST
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence DSYCQQEVVCALVTHVCSGNETELDISLDVLTDLVILHPSLLLRYATFVKTILDSMQKLNPCQIRKLFYI
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Known secondary structure (DSSP)
SS

TT




 .........430.........440.........450.........460.........470.........480.........490
Sequence LSTLAFSQRQEGSYIQDDMHMVIRKWLSSSVPNHKQMGIIGAVTMMGSVALECDGQLSTLLDLVGFCCEQ
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Known secondary structure (DSSP) TTTT
T
SS
TTTT


TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence TPEVLALYYDELANLIEKQKGNLDLQLLDKFGKSLVEDFPNDFVVDLSPTVDGSFLFPVKSLYNLDEDET
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Known secondary structure (DSSP)
T
SS

TT


TT


S
SS

S

S
SST
 .........570.........580.........590.........600.........610.........620.........630
Sequence QGAIAINLLPLVSVSPICLSPCFRLLRLYTGEQNNGSLEEIDALLGCPLYLTDLEVEGKLDSLSKQEREF
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Known secondary structure (DSSP) TTT




STTSSSTGGGTT



GGGGT
GGGTTTTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence LCSLLFYALNWFREVVNAFCQQQDAEMKGKVLTRLQNITELQNVLGKCLAATPGYVPPPALQSYRPYFRE
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Known secondary structure (DSSP) SSS

TTT
S








TTTTTS

 .........710.........720.........730.........740.........750.........760.........770
Sequence LDLEVFSVLHLGPAELCFLLDDMCWKLEHVLTFSHLCQRSPKEVAVCVVKLLKPLCNHMENMHNYFQTVN
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Known secondary structure (DSSP)

TTGGGGG





TTGGGS
T

 .........780.........790.........800.........810.........820.........830.........840
Sequence IQEYQLMSSCYHQLLLAFRLLFAWSGFSQHENSNLLRSALQVLADRLKPGETEFLPLEELISESFQYLLN
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Known secondary structure (DSSP) T
GGGGSGGGSSS


S

G
 .........850.........860.........870.........880.........890.........900.........910
Sequence FQASIPSFQCAFILTQVLMAISEKPMTGWKREKMASLAKQFLCQSWMKPGGDREKGSHFNSALHTLLCVY
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Known secondary structure (DSSP) GGG


SS
SS

S



TTSS


S
 .........920.........930.........940.........950.........960.........970.........980
Sequence LEHTDNILKAIEEISSVGVPELINSAKDGCSSTYPTLSRQTFPVFFRVMMAQLESSVKSIPAGKPSDSGE
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Known secondary structure (DSSP)
S

SSS

SS
TT

TTTTS



SS

SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VQLEKLLKWNIAVRNFHILINLVKVFDSRPVLSICLKYGRLFVEAFLKLAMPLLDHSFKKHRDDVQSLLK
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Known secondary structure (DSSP) GGGT


TTTT

 .........1060.........1070.........1080.........1090.........1100.........1110.........
Sequence TLQLSTRQLHHMCGHSKIHQDLGLTNHVPLLKKSLEQFVYRVKAMLAFNHCQEAFWVGVLKNRDLQGEE
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Known secondary structure (DSSP) T
TTTTT
GGG









TTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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