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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7zvwA_

Fold library idPDB HeaderMoleculeTitle
c7zvwA_3.40PDB header: transcriptionChain: A: PDB Molecule: transcription-associated protein;


Added to library: Sat Jun 3 17:12:18 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VVQLDDFATRLYQSKHSVLSEICDSLETYEYFLKSLIPLFIDVVANSPENKLRNITLEILHRIDALQAYS
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Known secondary structure (DSSP)






TTS

 .........80.........90.........100.........110.........120.........130.........140
Sequence NEIVDTLMDLLKVENELNGILCMKAITTLHKTQEKVHPFIDIVIEIYSNIPQVVEEQFSKQLAQAMFSFK
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Known secondary structure (DSSP) SSSS
TT





 .........150.........160.........170.........180.........190.........200.........210
Sequence TLAESPITMVSLYSSYKELAASSLGNNRANYGEFIIGQVKAASFLAYLFIRRQAQTFLEPYQQAIPDIII
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Known secondary structure (DSSP) SS

TT

TTS


SS
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence RLLQDCPSELSAARKELLHATRHILSTDFRKMFIPKIDLLFDLRVLIGEGFTAYETLRPLAYSTVADFIH
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Known secondary structure (DSSP) S
TT
TT
STTT


SS

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence NVRDHLTPAQLWKSVSIYCKNLQDDSLALTVQIMSAKLLLNLIEKIMRSESKTESRQLLMVIIDAYTKRF
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Known secondary structure (DSSP) GGG


SSS
S


 .........360.........370.........380.........390.........400.........410.........420
Sequence KMLNSRYNGIMMSLQEYLPIQVSVPPEIDLLKDSRYLFKTLMTFLKTIMIGLKNSNPPNWNETARGFSNE
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Known secondary structure (DSSP) T



GGG
S

SS





TT



TTTS




 .........430.........440.........450.........460.........470.........480.........490
Sequence DINILKSLFRECILALRFFTKEEKDLMEIFATMFIHIDPASFNEIVREELPFMYKQMLDFASLLHIPQFF
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Known secondary structure (DSSP) GGG

SS
TT
GGGG
 .........500.........510.........520.........530.........540.........550.........560
Sequence LASVITSSSFSGILITFLKSKLVDLGEVNIIKSNILIRLFKLCFMSVSLFPAANESVILPHLNELILKSL
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Known secondary structure (DSSP) SGGGTTTS
S
 .........570.........580.........590.........600.........610.........620.........630
Sequence KLSTTAKEPLVYFYLIRTLFRSIGGGRFENLYKEIMPLLQVLLESLSKLIHEARRPQERDIYVELCLTVP
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Known secondary structure (DSSP) TT
SST


T


SSSTT

 .........640.........650.........660.........670.........680.........690.........700
Sequence VRLSVLVPHLSYLMKPLVYALNGSQESVSQGLRTLELCVDNLTAEYFDPIIEPVIDDVMEALSKHLKPLP
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Known secondary structure (DSSP) S
STTTS
S
GGGT


TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence YYHQHSHTTLRILGKLGGRNRTFIKPVDNLKTDSELFQNVEAMFKIHGLPNEVPLSITPGLSAAFSLLTD
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Known secondary structure (DSSP) S

TTSSTT








STTTT



BSSSSS
S
SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence PRPRIHYRINSFKYISGIFQLFLGATQLPDDYANRLKESMDIILEDTIAPDEPLNKLHHFPVKDIAKYDS
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Known secondary structure (DSSP) SSS
TTS


S
T
S

SSS

S



 .........850.........860.........870.........880.........890.........900.........910
Sequence QMELLVKLLESIFYAVSLQEVREESKALIRGTCNHFILLYFNKMVINCIFDAIIYALSSDNSAVRSMGLE
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Known secondary structure (DSSP) GGGSTTT



SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence SVQLIYDSCVELFGNIDCALKFAPLNVMCSKFIHCCFEEPYHKKLAGCIGLEMMLNSLDIPMKYFNARQL
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Known secondary structure (DSSP) SSTSTTT
SSTS


T
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence EIIRALFYVLRDTAPELPCEVTNTAKRLILNSLKEWNKELTRNDVFSSVFQNLVSSLIVDLPNANEIVRA
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Known secondary structure (DSSP) S
TTS
STTTT


STTT
S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence TAQEALRTLSETTQVPIATMISPCKHILLAPIFGKPLRALPFQMQIGNIDAITFCMGLENSFLEYNEELN
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Known secondary structure (DSSP) TTS
STT
SS
TTTS
TSSS

SSTT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence RLVQEALALKTSEQLVRLRVVCIQLLSLAITKPEFAAAQQRSNIRVKILVVFFKSLCGRSIEIIRAAHGG
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Known secondary structure (DSSP)

STTTTTSS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence LKAVIDPKELLQNGLRPMLMNLSDHKKLTVASLEALSGLLKLKVGIGSKLLDHLLAWAQPRTLQQLGSQD
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Known secondary structure (DSSP)

SSS


T

TTTTTTTS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence LENNSTVQIIVAILDVFHLLPPTAHKFMNDLMNALLYLENNLHRCQYSPFREPLAKFLDRFPDESFEYFF
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Known secondary structure (DSSP) SSS
TTTT

SS

TTTT

S

TTS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence NEFSKREITTRFVYFVGLDSCSSLRAKVLESLPRVRGLLHQEKCVRFSNLVDLCESLAASDKEWIKDKEE
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Known secondary structure (DSSP) TT
SSSSS
T


SS

GGGGGG
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence LLGELLDAGSVCLTLKRSSNVVSPLYFQVDQGFETLQLLYIEYFKSQPLGHEKVFNFIDKISKEGLPFVL
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Known secondary structure (DSSP) T

SSS



S

STTS
SS


 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence EFDDFIFNEVVIPTVQQTLDTIIRMTPQVSSLDARVYLYKRIFLPICIYESEMHGDLSRAWLKSFDSDVW
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Known secondary structure (DSSP)

TTT
TT


SSS


TT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence KATGPLVDDYTSTLEDRYRLELMQLTALLIKGAPTALTDMRKDIIKFSWNYIKLDDNTSKQAAYVVTAYF
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Known secondary structure (DSSP) TTTTT


STT



SSS
S
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence ISRFLTTRIFVALLRCHQIDTRYLVKQALELLAPVLSERWLKWPRRVLSETQVANIYQLIVKFPDLFYPA
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Known secondary structure (DSSP)

TS


S





GGGGGTTT
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence RDHFIPNIITAMGKLTVLENQQLAIDLAELILKWETKLPFAQREACVTFLIRYICISELGKRALNILYEL
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Known secondary structure (DSSP) STT






 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence LGPVKLQFFERFLLGYCLNALEVLAVALKTWIIENVSYLQKLLEKCLQDIQEILQKVLGIILEAINKEDE
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Known secondary structure (DSSP)


T










 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence PEEVTNFISLIVNIIGVAAGVSLCWTLSLYRPNALDSLLPSIMRTFNKLCRDHIAEFEAKVTTNLLEKIL
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Known secondary structure (DSSP)


TTSTTT
TT


S
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence NLCAADQRRVFLSLLAQLIDRSVDKDMLLKVINIVTEWIFTTKEKAGILGKMMIFDLELSKKFNQVIVDI
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Known secondary structure (DSSP)

S






 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence FESKHTELTARMETAFLFGTRLSDVSIRKKLMSILSDSLELDIDKRLFYIIKDQNWEYLSDYPWLNQALQ
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Known secondary structure (DSSP)

SS
S
S
T


TTTTSS
T
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence LLYGSFHLDSPIRLSIIDFVAKHNEFLDSVRSLTAGDILNPLIDISYQSAETIHNAWVVVFPVAYSAIES
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Known secondary structure (DSSP) TTB
SS






S


TTTT
TS
G
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence RYELEFTRALVKLLFKDYHIRQQDARPNVIKSLLDGVGKCPGLHLPPHLVKYLGSNYNAWYGAIKLLEEL
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Known secondary structure (DSSP) GG
GGGGGGSS
TT
STT



TT
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence SEGQGIDNQKISDANQDALLEVYMSLQEDDMFYGTWRRRAKYFETNAALSYEQIGIWDKALQLYEAAQIK
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Known secondary structure (DSSP) SS

GGGTT


ST

 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence ARSGVFPFGESEYSLWEDHWIYCAEKLQHWEILTELAKHEGFTDLLLECGWRGADWIADREPLEQSVKTV
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Known secondary structure (DSSP) TTSS


STTTT


STTTTS
SSSS
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence MDIPTPRRQIFQTFLALQGFSQQKDTLQDVSRLCDEGIQLTLRKWNALPQRVTRAHIGLLHTFQQYVELM
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Known secondary structure (DSSP) TSS

TTSS
S
SS

TT
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence EASQVYSSLVTTNAQNLDVKSQELKRVLQAWRERLPNVWDDINIWNDLVTWRQHVFGVINRVYMAYRGYH
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Known secondary structure (DSSP) S

TT
T



TTS
T





 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence EMAWVINRFAHVARKHEMPEVCINQLTKIYTLPNIEIQEAFLKLREQAKCHYQNSSELNTGLDVISNTNL
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Known secondary structure (DSSP) TT

S
TT

S
S
SS
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence VYFATQQKAEFFTLKGMFLAKLNAKDEANQAFATAVQIDLNLPKAWAEWGFFNDRRFKENPEEIFHAKNA
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Known secondary structure (DSSP)
SS
TT

TT
S
TTS
T
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence ISCYLQAAGLGKTRKLLCRILWLISLDDAAGSLAKTFEDHHGESPVWYWITFVPQLLTSLSHKEAKIVRH
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Known secondary structure (DSSP)





S

SS


S


SGGGSTTTSTT
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence ILIQIAKSYPQSLHFQLRTTKQPWQDVEEIMGILKTAYPLLALSLESLVDQLNQRFKCNADEDAYRLVIV
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Known secondary structure (DSSP) ST

SS



 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence LYNDGVQQMNRVANPREEVKLPAATEASISRFADSVLPKNIREVFEQDIIACNPNLETYISKLRKWRDCL
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Known secondary structure (DSSP)
SS

SS
B

S
SSSSS
B
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence EEKLDRSYGKADLERVSLHLSLFHHQKFEDIEIPGQYLLHKDNNNHFIKIERFLPTLDLVRGSNGCYKRM
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Known secondary structure (DSSP) S
S
T

S

B
TTGGGS

S
STT

B
S
SSS
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence TIRGNDGSLHPFAVQFPAARHCRREERIFQLFRIFDDALSRKVQSRRRNISLTLPIAVPLSPHIRILNDD
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Known secondary structure (DSSP) TTS
SS

TTTTSTTT






TT


 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence KRYTTLMGIYEEFCRRKGQSRDEPFAYTIQKLRAAFDPRLPKPDIVSVRAEVLASIQSTLVPSTLLKDYY
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Known secondary structure (DSSP) TT





TTS
TTS



TS
S
S
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence TEKFSNYENYWLFRKQFTAQYASFIFMTYIMCINSRQPQKIHINEGSGNIWTSEMLPTKVATGKTHSTAY
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Known secondary structure (DSSP)

STT




TTS
SSS

S




GGGS


GG
 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence NNSTLDPAVKAGAPIFYNTESVPFRLTPNIQKFIGEAGLEGILSVYILVIANSLSDSEFDMEQYLSLFVR
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Known secondary structure (DSSP) GTT
SS
TT






SSSSS



TTTTSSSS

 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence DEVISWFAQQHRASAQTNQLREIVRVNVELLTKRVLQLNHIPNSQNVATQFVLNLISQAVNPRNLAYTDS
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Known secondary structure (DSSP) TT
S


TS

SS
SS
TT
SS
G
 ......
Sequence AWMAYL
Predicted secondary structure





SS confidence





Known secondary structure (DSSP) GG
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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