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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7z8gA_

Fold library idPDB HeaderMoleculeTitle
c7z8gA_3.52PDB header: structural proteinChain: A: PDB Molecule: cytoplasmic dynein 1 heavy chain 1;


Added to library: Sat Jul 30 10:02:33 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QDLKGVWSELSKVWEQIDQMKEQPWVSVQPRKLRQNLDALLNQLKSFPARLRQYASYEFVQRLLKGYMKI
Predicted secondary structure











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Known secondary structure (DSSP)
TSBGGG

TTS
TST
 .........80.........90.........100.........110.........120.........130.........140
Sequence NMLVIELKSEALKDRHWKQLMKRLHVNWVVSELTLGQIWDVDLQKNEAIVKDVLLVAQGEMALEEFLKQI
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Known secondary structure (DSSP) T
TT

T



TTT
BS
TTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence REVWNTYELDLVNYQNKCRLIRGWDDLFNKVKEHINSVSAMKLSPYYKVFEEDALSWEDKLNRIMALFDV
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Known secondary structure (DSSP)
B

TTT

TT
TTTTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence WIDVQRRWVYLEGIFTGSADIKHLLPVETQEFQSISTEFLALMKKVSKSPLVMDVLNIQGVQRSLERLAD
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Known secondary structure (DSSP) TT
SS
T

BTSTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence LLGEIQKALGEYLERERSSFPRFYFVGDEDLLEIIGNSKNVAKLQKHFKKMFAGVSSIILNEDNSVVLGI
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Known secondary structure (DSSP) SGGGGGS
TSS
GGGGGGGSSS


TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence SSREGEEVMFKTPVSITEHPKINEWLTLVEKEMRVTLAKLLAESVTEVEIFGKATSIDPNTYITWIDKYQ
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Known secondary structure (DSSP)
TT

TTTS
ST
SS

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence AQLVVLSAQIAWSENVETALSSMGGGGDAAPLHSVLSNVEVTLNVLADSVLMEQPPLRRRKLEHLITELV
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Known secondary structure (DSSP) TTS


S


 .........500.........510.........520.........530.........540.........550.........560
Sequence HQRDVTRSLIKSKIDNAKSFEWLSQMRFYFDPKQTDVLQQLSIQMANAKFNYGFEYLGVQDKLVQTPLTD
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Known secondary structure (DSSP) T


TTSTS

TT
SSSSSSTT






S






 .........570.........580.........590.........600.........610.........620.........630
Sequence RCYLTMTQALEARLGGSPFGPAGTGKTESVKALGHQLGRFVLVFNCDETFDFQAMGRIFVGLCQVGAWGC
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Known secondary structure (DSSP) TT

STTSSTT


SS



TTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence FDEFNRLEERMLSAVSQQVQCIQEALREHSNPNYDKTSAPITCELLNKQVKVSPDMAIFITMNPGSNLPD
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Known secondary structure (DSSP) TGGGS
GGG
SSS
TTS


TT

TT

B






T
 .........710.........720.........730.........740.........750.........760.........770
Sequence NLKKLFRSLAMTKPDRQLIAQVMLYSQGFRTAEVLANKIVPFFKLCDEQLSSQSHYDFGLRALKSVLVSA
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Known secondary structure (DSSP) TTTTT




TT
S

S


TT


S
 .........780.........790.........800.........810.........820.........830.........840
Sequence GNVKRERIQKIKREKEERGEAVDEGEIAENLPEQEILIQSVCETMVPKLVAEDIPLLFSLLSDVFPGVQY
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Known secondary structure (DSSP) SS



SS
GGG

TTTSTT


 .........850.........860.........870.........880.........890.........900.........910
Sequence HRGEMTALREELKKVCQEMYLTYGDGEEVGGMWVEKVLQLYQITQINHGLMMVGPSGSGKSMAWRVLLKA
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Known secondary structure (DSSP)




TT



SSSSTT
S


SSSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence LERLEGVEGVAHIIDPKAISKDHLYGTLDPNTREWTDGLFTHVLRKIIDSVRGELQKRQWIVFDGDVDPE
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Known secondary structure (DSSP)



TTTS


B
SSS

B


TTT
TTTSS


TG
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence WVENLNSVLDDNKLLTLPNGERLSLPPNVRIMFEVQDLKYATLATVSRCGMVWFSEDVLSTDMIFNNFLA
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Known secondary structure (DSSP) GGSTT

TT



TT
S

TT

S


GGGS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence RLRSIPLDEGEDEAQRRRKGKEDEGEEAASPMLQIQRDAATIMQPYFTSNGLVTKALEHAFQLEHIMDLT
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Known secondary structure (DSSP) S
SSSTTTTTT
SS
TT
TTS
GGGGSTTSS

SS


 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence RLRCLGSLFSMLHQACRNVAQYNANHPDFPMQIEQLERYIQRYLVYAILWSLSGDSRLKMRAELGEYIRR
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Known secondary structure (DSSP)
TTS


GGGS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence ITTVPLPTAPNIPIIDYEVSISGEWSPWQAKVPQIEVETHKVAAPDVVVPTLDTVRHEALLYTWLAEHKP
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Known secondary structure (DSSP)

S




TTS
GGG
SSSSGGGGS





SSSSS


S



TT

 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence LVLCGPPGSGKTMTLFSALRALPDMEVVGLNFSSATTPELLLKTFDHYCEYRRTPNGVVLAPVQLGKWLV
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Known secondary structure (DSSP)
STTSSSSS



TT


SS
SSTT

 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence LFCDEINLPDMDKYGTQRVISFIRQMVEHGGFYRTSDQTWVKLERIQFVGACNPPTDPGRKPLSHRFLRH
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Known secondary structure (DSSP) TTSS
S


TTS

STTTTSS


TTSTT




TT
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence VPVVYVDYPGPASLTQIYGTFNRAMLRLIPSLRTYAEPLTAAMVEFYTMSQERFTQDTQPHYIYSPREMT
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Known secondary structure (DSSP) S




TTSSTTSGGG

TTT
TT



 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence RWVRGIFEALRPLETLPVEGLIRIWAHEALRLFQDRLVEDEERRWTDENIDTVALKHFPNIDREKAMSRP
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Known secondary structure (DSSP) SS
S


TTT

SSTT



SS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence ILYSNWLSKDYIPVDQEELRDYVKARLKVFYEEELDVPLVLFNEVLDHVLRIDRIFRQPQGHLLLIGVSG
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Known secondary structure (DSSP)

SSSSSS


TTT

S




STT


SSS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence AGKTTLSRFVAWMNGLSVYQIKVHRKYTGEDFDEDLRTVLRRSGCKNEKIAFIMDESNVLDSGFLERMNT
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Known secondary structure (DSSP) TTTTTTT




TT

TS


TTTT

SSTTT
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence LLANGEVPGLFEGDEYATLMTQCKEGAQKEGLMLDSHEELYKWFTSQVIRNLHVVFTMNPSSEGLKDRAA
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Known secondary structure (DSSP) S

TTSSTTT






S


SSSSSS
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence TSPALFNRCVLNWFGDWSTEALYQVGKEFTSKMDLEKPNYIVPDYMPVVYDKLPQPPSHREAIVNSCVFV
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Known secondary structure (DSSP)

S




TTSSSS



TT



SS


S
TT

SS

 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence HQTLHQANARLAKRGGRTMAITPRHYLDFINHYANLFHEKRSELEEQQMHLNVGLRKIKETVDQVEELRR
Predicted secondary structure


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Known secondary structure (DSSP) TT







 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence DAKVNRSTALLKSLSAERERWEKTSETFKNQMSTIAGDCLLSAAFIAYAGYFDQQMRQNLFTTWSHHLQQ
Predicted secondary structure



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Known secondary structure (DSSP)

TTTSS
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence ANIQFRTDIARTEYLSNADERLRWQASSLPADDLCTENAIMLKRFNRYPLIIDPSGQATEFIMNEYKDRK
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Known secondary structure (DSSP) TT



SS

T

TT



TTS
SS

SS
TGGGT
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence ITRTSFLDDAFRKNLESALRFGNPLLVQDVESYDPVLNPVLNREVRRTGGRVLITLGDQDIDLSPSFVIF
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Known secondary structure (DSSP)
TTSGGG



GGG

GGGT

TTTT

TT

 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence LSTRDPTVEFPPDLCSRVTFVNFTVTRSSLQSQCLNEVLKAERPDVDEKRSDLLKLQGEFQLRLRQLEKS
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Known secondary structure (DSSP) S
S




T





TTSSTT
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence LLQALNEVKGRILDDDTIITTLENLKREAAEVTRKVEETDIVMQEVETVSQQYLPLSTACSSIYFTMESL
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Known secondary structure (DSSP) TTS

SS
TTSSS
TTTSTG
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence KQIHFLYQYSLQFFLDIYHNVLYENPNLKGVTDHTQRLSIITKDLFQVAFNRVARGMLHQDHITFAMLLA
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Known secondary structure (DSSP) GGT
TT



TS
GGGTT


TTS
GGG
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence RIKLKGTVGEPTYDAEFQHFLRGNEIVLSAGSTPRIQGLTVEQAEAVVRLSCLPAFKDLIAKVQADEQFG
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Known secondary structure (DSSP) SSSS


STTS


TT




TT

TTSSTTTT
TT
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence IWLDSSSPEQTVPYLWSEETPATPIGQAIHRLLLIQAFRPDRLLAMAHMFVSTNLGESFMSIMEQPLDLT
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Known secondary structure (DSSP) T
S
GGGG



S

SS



GGGT
TTTTTTTSS


 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence HIVGTEVKPNTPVLMCSVPGYDASGHVEDLAAEQNTQITSIAIGSAEGFNQADKAINTAVKSGRWVMLKN
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Known secondary structure (DSSP) T

TTS

TT


T


SST

 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence VHLAPGWLMQLEKKLHSLQPHACFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGVKANMLRTFSSIPVSR
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Known secondary structure (DSSP) GGG
TT



TT


TTS
TS



SS
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence ICKSPNERARLYFLLAWFHAIIQERLRYAPLGWSKKYEFGESDLRSACDTVDTWLDDTAKGRQNISPDKI
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Known secondary structure (DSSP) SSSTGGGTTTSSSS




TT
S


TTTS
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence PWSALKTLMAQSIYGGRVDNEFDQRLLNTFLERLFTTRSFDSEFKLACKVDGHKDIQMPDGIRREEFVQW
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Known secondary structure (DSSP)
TTSTTT

SSSGGGGSTT
TTT




S
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence VELLPDTQTPSWLGLPNNAERVLLTTQGVDMISKMLKMQMLEDEDAWMRTLHTTASNWLHLIPQTLSHLK
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Known secondary structure (DSSP) TS
S


GGGGTS
TTTTTTS



S
S





 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence RTVENIKDPLFRFFEREVKMGAKLLQDVRQDLADVVQVCEGKKKQTNYLRTLINELVKGILPRSWSHYTV
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Known secondary structure (DSSP)

T
TSS


T


GGG

S

 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence PAGMTVIQWVSDFSERIKQLQNISLAAASGGAKELKNIHVCLGGLFVPEAYITATRQYVAQANSWSLEEL
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Known secondary structure (DSSP)
TT

GGGS
GGGSS
T

STT
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence CLEVNVTTSQGATLDACSFGVTGLKLQGATCNNNKLSLSNAISTALPLTQLRWVKQTNTEKKASVVTLPV
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Known secondary structure (DSSP)

STT



TT

TTT
S
S


S






TT
 .........3020.........3030.........3040.......
Sequence YLNFTRADLIFTVDFEIATKEDPRSFYERGVAVLCTE
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Known secondary structure (DSSP) SSTT

SSSS

T
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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