Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7xyaF_

Fold library idPDB HeaderMoleculeTitle
c7xyaF_3.30PDB header: transcriptionChain: F: PDB Molecule: rna polymerase sigma factor rpod;


Added to library: Sat Jul 23 08:38:27 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMSAIAQFPGTVDSILADYNRIVAEGGRLSDVL
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP)



TS



T
TTSS
GGGTB
 .........80.........90.........100.........110.........120.........130.........140
Sequence SGYIDPEEARLRFTAVSEQLDKAKKALKQATAELTGLAELFMPIKLVPKQFDALVARVRSALEGVRAQER
Predicted secondary structure



SS confidence





































































Known secondary structure (DSSP)




T

TT

B
 .........150.........160.........170.........180.........190.........200.........210
Sequence AIMQLCVRDARMPRADFLRLFPNHETDEKWVDSVLKSKPKYAEAIERLRDDILRNQQKLAALESEVELTV
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP)


STTT
SST

GGGT

 .........220.........230.........240.........250.........260.........270.........280
Sequence AEIKEINRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP) GGGTTTTS
T

STT

 .........290.........300..
Sequence KFSTYATWWIRQAITRSIADQA
Predicted secondary structure


SS confidence





















Known secondary structure (DSSP)
T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D