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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7xvfA_

Fold library idPDB HeaderMoleculeTitle
c7xvfA_2.80PDB header: membrane proteinChain: A: PDB Molecule: sodium channel protein type 9 subunit alpha;


Added to library: Sat Aug 13 09:17:52 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GPQSFVHFTKQSLALIEQRIAERKSKEPKPSSDLEAGKQLPFIYGDIPPGMVSEPLEDLDPYYADKKTFI
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B






STT
TTSB

GGG
S

TTTSSS
B


SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence VLNKGKTIFRFNATPALYMLSPFSPLRRISIKILVHSLFSMLIMCTILTNCIFMTMNNPPDWTKNVKYTF
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Known secondary structure (DSSP)
TT
B
S
GGGSS
TTSSS
SS

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence TGIYTFESLVKILARGFCVGEFTFLRDPWNWLDFVVIVFAYLTEFVNVSALRTFRVLRALKTISVIPGLK
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Known secondary structure (DSSP)
SS
SSS
GGGS


TTTSTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence TIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCFRNSLENNETLESIMNTLESEEDFRKY
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Known secondary structure (DSSP)
TTGGGSS
STT



S
 .........290.........300.........310.........320.........330.........340.........350
Sequence FYYLEGSKDALLCGFSTDSGQCPEGYTCVKIGRNPDYGYTSFDTFSWAFLALFRLMTQDYWENLYQQTLR
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Known secondary structure (DSSP) B


TT
SS




SSSSS



TT
S

SGGGTS

SSTSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence AAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKCSPYWIKFKKCIYFIVMDPFVDLAI
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Known secondary structure (DSSP)
GGGT



 .........430.........440.........450.........460.........470.........480.........490
Sequence TICIVLNTLFMAMEHHPMTEEFKNVLAIRNLVFTGIFAAEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSL
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Known secondary structure (DSSP) TT

SS

S
STT
 .........500.........510.........520.........530.........540.........550.........560
Sequence VELFGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGAFGNLMLVLFIIVFIFAVVGMQLFGKSYKEC
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GGGSTTGGGGGGGGGGGST
 .........570.........580.........590.........600.........610.........620.........630
Sequence VCKINDDCTLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIFYMMVFFIGNLVVLNLFLA
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Known secondary structure (DSSP)
TT
S

SS
SSST


TTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence LLLSSFSANNLQIAVTRIKKGINYVKQTLREFILKAFGKIWWNIRKTCYKIVEHSWFESFIVLMILLSSG
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Known secondary structure (DSSP)




S
 .........710.........720.........730.........740.........750.........760.........770
Sequence ALAFEDIYIERKKTIKIILEYADKIFTYIFILEMLLKWIAYGYKTYFTNAWCWLDFLIVDVSLVTLVANT
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Known secondary structure (DSSP)

TTTTT
T
TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence LGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF
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Known secondary structure (DSSP) T

SSGGGGTT
TTSS

 .........850.........860.........870.........880.........890.........900.........910
Sequence YECINTTDGSRFPASQVPNRSECFALMNVSQNVRWKNLKVNFDNVGLGYLSLLQVATFKGWTIIMYAAVD
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Known secondary structure (DSSP) TTTT



SSS

B
SS
SS
SSSTSSTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence SVNVDKQPKYEYSLYMYIYFIFFIIFGSFFTLNLFICVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKK
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Known secondary structure (DSSP)


SSB


TTSSGGGTTS

SS

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LGSKKPQKPIPRPGNKIQGCIFDLVTNQAFDISIMVLICLNMVTMMVEKEGQSQHMTEVLYWINVVFIIL
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Known secondary structure (DSSP) T










SSS

TT

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence FTGECVLKLISLRHYYFTVGWNIFDFVVVIISIVGMFLADLIETYFVSPTLFRVIRLARIGRILRLVKGA
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Known secondary structure (DSSP) GGGGGGSTS

GGGGT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence KGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEDGINDMFNFETFGNSMICLFQITTS
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Known secondary structure (DSSP) TT



TT

SSSSSSSTT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence AGWDGLLAPILNSKPPDCDPKKVHPGSSVEGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVAT
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Known secondary structure (DSSP)
S

STTTS
TT


TT
S






T
 .
Sequence E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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