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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7xm9A_

Fold library idPDB HeaderMoleculeTitle
c7xm9A_3.22PDB header: transport proteinChain: A: PDB Molecule: isoform 3 of sodium channel protein type 9 subunit alpha,


Added to library: Sat Dec 3 12:13:12 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PGPQSFVHFTKQSLALIEQRIAERPSSDLEAGKQLPFIYGDIPPGMVSEPLEDLDPYYADKKTFIVLNKG
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Known secondary structure (DSSP)

TTT

B




GGG
TTSB

GGG



TTTTTS

S
TSS
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence KTIFRFNATPALYMLSPFSPLRRISIKILVHSLFSMLIMCTILTNCIFMTMNNPPDWTKNVEYTFTGIYT
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Known secondary structure (DSSP)
BSS
BTTTB
TTSS
TTSS

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence FESLVKILARGFCVGEFTFLRDPWNWLDFVVIVFAYLTEFVNLGNVSALRTFRVLRALKTISVIPGLKTI
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Known secondary structure (DSSP)
SSSSTT
TTTSTSS

S
GGGGGGGTSTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCFRNSLENNETLESIMNTLESEEDFRKYFY
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Known secondary structure (DSSP) TTGGGS


TT

TT

STTB
 .........290.........300.........310.........320.........330.........340.........350
Sequence YLEGSKDALLCGFSTDSGQCPEGYTCVKIGRNPDYGYTSFDTFSWAFLALFRLMTQDYWENLYQQTLRAA
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Known secondary structure (DSSP)

SS
SS




SSTTT



TT
S

SGGGTS
SSSTTSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence GKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKCSPYWIKFKKCIYFIVMDPFVDLAITI
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Known secondary structure (DSSP)
GGG

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence CIVLNTLFMAMEHHPMTEEFKNVLAIGNLVFTGIFAAEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSLVE
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Known secondary structure (DSSP) TS

SS

TTSTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence LFLLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVC
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Known secondary structure (DSSP) S



TTGGGGGGGGGGGGGT
TTTTTGG
 .........570.........580.........590.........600.........610.........620.........630
Sequence KINDDCTLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVYMMVMVIGNLVVLNLFLALL
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Known secondary structure (DSSP) GT
SSSS

SS
SSSTT


 .........640.........650.........660.........670.........680.........690.........700
Sequence LSSFSGKIWWNIRKTCYKIVEHSWFESFIVLMILLSSGALAFEDIYIERKKTIKIILEYADKIFTYIFIL
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Known secondary structure (DSSP)



TTTT
SGGGSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence EMLLKWIAYGYKTYFTNAWCWLDFLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRV
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Known secondary structure (DSSP) T

S

STGGGGGGGGGGTTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence VVNALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYECINTTDGSRFPASQVPNRSECFALMNVSQN
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Known secondary structure (DSSP) TT


TTTT



SSSS
B
SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence VRWKNLKVNFDNVGLGYLSLLQVATFKGWTIIMYAAVDSVNVDKQPKYEYSLYMYIYFVVFIIFGSFFTL
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Known secondary structure (DSSP)

SSSSSSTSS


STTB


TTSS

T
 .........920.........930.........940.........950.........960.........970.........980
Sequence NLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKIQGCIFDLVTNQAFDI
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Known secondary structure (DSSP) TTTS
SS

GGG










SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SIMVLICLNMVTMMVEKEGQSQHMTEVLYWINVVFIILFTGECVLKLISLRHYYFTVGWNIFDFVVVIIS
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Known secondary structure (DSSP) T

TT

TTTSTTS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence IVGMFLADLIETYFVSPTLFRVIRLARIGRILRLVKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYA
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Known secondary structure (DSSP)


GGGGGGGGT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence IFGMSNFAYVKKEDGINDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPDCDPKKVHPGSSVEGD
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Known secondary structure (DSSP) TTT



SS

STTSSSSTTTT

STTSS
SS


TT
S



 .........1200.........1210.........1220.........1230
Sequence CGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEE
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Known secondary structure (DSSP)


TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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