PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c7xcaA_

Fold library id	PDB Header	Molecule	Title
c7xcaA_	2.50	PDB header: viral protein	Chain: A: PDB Molecule: capsid protein spike domain;

Links to external resources
Added to library: Sat Apr 1 12:17:06 2023

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E D T I Y L R F K P D T L S V V S N F Q P A K R P M L A K T Y S G D T L T V G Q G N N K T A I H T V V R I S D P T W F S A D W D P I S T P Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
B
S S S
S B
S
T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P I A E I Y C K A G T T T V G D I L A A Y Q V H G L G N H T T T A Y V V R M T A G A N P Q V S A G I V T N K G T N D Y D L K T A N S N A G F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
G G G S S
B
T T
S S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S W N L G S G T W Y L M M S F G D A L G S L G T W R W T P N E L S A N Y T I Y N C E I I P C L L L A N D D F H I V I P T K N A L V P L V A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T
T T
S
T T
T T G G G G S
B S
S S S
S S

.

Sequence E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	D	T	I	Y	L	R	F	K	P	D	T	L	S	V	V	S	N	F	Q	P	A	K	R	P	M	L	A	K	T	Y	S	G	D	T	L	T	V	G	Q	G	N	N	K	T	A	I	H	T	V	V	R	I	S	D	P	T	W	F	S	A	D	W	D	P	I	S	T	P	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														B		B		S	S	S		S	B											S							T	T																			T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	I	A	E	I	Y	C	K	A	G	T	T	T	V	G	D	I	L	A	A	Y	Q	V	H	G	L	G	N	H	T	T	T	A	Y	V	V	R	M	T	A	G	A	N	P	Q	V	S	A	G	I	V	T	N	K	G	T	N	D	Y	D	L	K	T	A	N	S	N	A	G	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T						T	T															G	G	G											S	S		B														T	T		S	S							S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	W	N	L	G	S	G	T	W	Y	L	M	M	S	F	G	D	A	L	G	S	L	G	T	W	R	W	T	P	N	E	L	S	A	N	Y	T	I	Y	N	C	E	I	I	P	C	L	L	L	A	N	D	D	F	H	I	V	I	P	T	K	N	A	L	V	P	L	V	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				B		T	T															T	T							S				T	T							T	T	G	G	G	G	S			B	S										S	S	S				S	S
	.
Sequence	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)