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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7xc7A_

Fold library idPDB HeaderMoleculeTitle
c7xc7A_3.10PDB header: rna binding protein/rnaChain: A: PDB Molecule: ramp superfamily protein;


Added to library: Sat Nov 19 14:00:46 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MNITVELTFFEPYRLVEWFDWDARKKSHSAMRGQAFAQWTWKAGKSFITGTLVRSAVIKAVEELLSLNNG
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Known secondary structure (DSSP)

S

B


TTTTTT
GGGS






TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence KWEGVPCCNGSFQTDESKGKKPSFLRKRHTLQWQANNKNICDKEEACPFCILLGRFDNAGKVHERNKDYD
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Known secondary structure (DSSP) TT








SSS



SS


S

S


S



TTS

T
SSS

SS


S


S
 .........150.........160.........170.........180.........190.........200.........210
Sequence IHFSNFDLDNDLRLVDIASGRILNRVDFDTGKAKDYFRTWEADYETYGTYTGRITLRNEHAKKLLLASLG
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Known secondary structure (DSSP)






STTTB


SSSSS
BB
SSSS



GGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence FVDKLCGALCRIEVIHNDELRKQAEVIVEAFKQNDKLEKIRILADAIRTLRLHGEGVIEKDELPDGKEER
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Known secondary structure (DSSP)


BTTB


TT
GGGSTTTS
TTT
S


STT
 .........290.........300.........310.........320.........330.........340.........350
Sequence DKGHHLWDIKVQGTALRTKLKELWQSNKDIGWRKFTEMLGSNLYLIYKKETGVSTRFRILGDTEYYSKAG
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Known secondary structure (DSSP) SS

SSSSSTTT
TTT
T





SS


B





 .........360.........370.........380.........390.........400.........410.........420
Sequence SDLFIPVTPPEGIETKEWIIVGRLKAATPFYFGVQQPSDSIPGKEKKEDSLVINEHASFNILLDKENRYR
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Known secondary structure (DSSP)






TT


SS





TTTS
SSS








S
SS
B
TT

B
 .........430.........440.........450.........460.........470.........480.........490
Sequence IPRSALRGALRRDLRTAFGSGCNVSLGGQILCNCKVCIEMRRITLKDSVSDFSEPPEIRYRIAKNPGTAT
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Known secondary structure (DSSP)
S





SS
SS


ST



S




TTTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence VEDGSLFDIEVGPEGLTFPFVLRYRGHKFPEQLSSVIRYWEENDGKNGMAWLGGLDSTGKGRFALKDIKI
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Known secondary structure (DSSP)

TT
SS

B

TTT



SS
TTTT

 .........570.........580.........590.........600.........610.........620.........630
Sequence FEWDLNQKINEYIKERGMRGKEKELLEMGLPDGLIPYKFFEERECLFPYKENLKPQWSEVQYTIEVGSPL
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Known secondary structure (DSSP)
TTT
GGG
S
TT



SS

S



GGG
TTTTSS

 .........640.........650.........660.........670.........680.........690.........700
Sequence LTADTISALTEPGNRAAIAYKKRVYNDGNNAIEPEPRFAVKSETHRGIFRTAVGRRTGDLGKEDHEDCTC
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Known secondary structure (DSSP)


BSSSTT

S



B
SSSSSB
SS

T
TT
S

SS


 .........710.........720.........730.........740.........750.........760.........770
Sequence DMCIIFGNEHESSKIRFEDLELINGNEFEKLEKHIDHVAIDRFTGGALDKAKFDTYPLAGSPKKPLKLKG
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Known secondary structure (DSSP) TT

SSS

S





TT
S

B



B
TTTSSB
TT


B

BTTB
 .........780.........790.........800.........810.........820.........830.........840
Sequence RFWIKKGFSGDHKLLITTALSDIRDGLYPLGSKGGVGYGWVAGISIDDNVPDDFKEMIGPINNDYVHPGH
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Known secondary structure (DSSP) TT

TSS

SS
TTTTTT

TTS



B



B


T
 .........850.........860.........870.........880.........890.........900.........910
Sequence QSPKIYYPHYFLDSGSKVYREKDIITHEEFTEELLSGKINCKLETLTPLIIPDTSDENGLKLQGNKPGHK
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Known secondary structure (DSSP) T





SS



S





S


SSS

SSSSS



TT
TBSS

TTTSTT
B
 .........920.........930.........940.........950.........960.........970.........980
Sequence NYKFFNINGELMIPGSELRGMLRTHFEALTKSCFAIFGEDSTLKTLGGKLDKALHPCTGLSDGLCPGCHL
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Known secondary structure (DSSP) B

TT
TT


SS


S




TTTSS
TTSS


STTT


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence FGTTDYKGRVKFGFAKYENGPEWLITPERSLTLGVLESPRPAFSIPDDESEIPGRKFYLHHNGWRIIRQK
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Known secondary structure (DSSP) T
BTTB

S



SS







S










S
STTS










S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence QLEIRETVQPERNVTTEVMDKGNVFSFDVRFENLREWELGLLLQSLDPGKNIAHKLGKGKPYGFGSVKIK
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Known secondary structure (DSSP) STTS
TTT
B





TT




BTB

SS
TTTT

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence IDSLHTFKIKRVPQSDIREYINKGYQKLIEWVLPQWHVIPHIDKLYKLLWVPFLNDYKKLGDKDNLPYKT
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Known secondary structure (DSSP)




STTTTTTT




GGGSTB
TTS



GGGSTTT
SS

 .
Sequence R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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