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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7wkkb_

Fold library idPDB HeaderMoleculeTitle
c7wkkb_4.20PDB header: structural proteinChain: B: PDB Molecule: nup188 domain-containing protein;


Added to library: Wed Jun 22 06:16:16 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TSRELWTILLGRSSMKDGYQIKAELDRYGDRLLQGLAYYKPPSTRSADKVKANKNLSPALQELGLRLSKF
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Known secondary structure (DSSP)
TT
SS


TGGGGS




TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence LALDEEQSVELLQTYLQYDYRGTQESVKVLPQDERQSQALMLKMADYYYEERISLLRCVLYILNYFQDDK
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Known secondary structure (DSSP) T

T

S
TTGGGTTTTSTSS
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence HPYSAEFSKCVELMEQKELFGKYLKQFESLCREEAPTWETHGNFMTERQVSRWFVQRLREQAMLLEIIFL
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Known secondary structure (DSSP) STTTTTS





TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence YFACFAASPSDLLALTKLFKEQGFGCRLQNHHLVEPSMDPLVERIGYFSILIFLEALDMDTLMTCSLSDK
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Known secondary structure (DSSP) S


TGGGTS
TTGGG

GGGTT
T
 .........290.........300.........310.........320.........330.........340.........350
Sequence IEQHPFSSEEQVCKEMDSILVTLGDVPHHGPVLLAWALLRFTLNPDKVTSAVRKMGSTAIQLHLFQYLTR
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Known secondary structure (DSSP) GGGSTTSS
TT

SSTT
STT

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence MLQSLRSGENNCTTSTACLCVYTFLAYVLSTLEEQVSQSQQDLVETACQVFAAPNLPDLFWNMEPTAGLG
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Known secondary structure (DSSP) TTT


TTGGGGGTTTTSTTS
TTST
 .........430.........440.........450.........460.........470.........480.........490
Sequence ILLDSVVGMFPFRISPLLKLFTALVSKSSAKKVYSFLDRMSSYTEHYRHKPHDILSHDDETLWKRQTPKL
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Known secondary structure (DSSP) TTTTTS

TTTS
S
SS

TT
TTSS
S
 .........500.........510.........520.........530.........540.........550.........560
Sequence LYALGLGQTNLRIPQGALGQVMADENGFLVRWEYSYSCWTLFTCEIEMLLHVVSTADVIHQCQRVKPIID
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Known secondary structure (DSSP) S


TT
S



TT
TT




TTSST
 .........570.........580.........590.........600.........610.........620.........630
Sequence LVHKVISTDLSIADCLLPITSRIYMLLQRLTTVMNPPMDFLSSCVDCLTALATRLPAKVWTDLRHTGGGY
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Known secondary structure (DSSP) TT
GGGTTTTSSSSS

TT


T
 .........640.........650.........660.........670.........680.........690.........700
Sequence GSLFGIEQSQGEYSVTLSFLRLITTLVKGQLGSTQSQGLVPCILFVLREMLPNYHRWRYNSHGVREQLGF
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Known secondary structure (DSSP) T

TT

GGGGGGTTTTTS

SSSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence QILSLIHAILNLLRSLCIFSLTNTEAGQAVINIMGIGVDTLNTVMLTQAGSSGTEGQGQMLMQTIKLAFS
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Known secondary structure (DSSP) T

STT

SSTTSSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence ITNNVIRLKPLEHALTQHGAHGNNLIAVLAKYIYHRYDPSLPRLAIQLLKRLAMVAPMSVYACLGSDAAA
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Known secondary structure (DSSP)

S

TTS

GGG

S
T

S
GGG
 .........850.........860.........870.........880.........890.........900.........910
Sequence IRDAFLSRLRDNIEDMQIKIMILEFLTVAVETQPGLIELFLNSCLQVVLKLIDWGAPLLHRSAIAFLHAL
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Known secondary structure (DSSP)
SSS







 .........920.........930.........940.........950.........960.........970.........980
Sequence WQDRRDSAMTVLRTKPNFWENLTSPLFGTLACPSESSELSILETCAFIMKIICLEIYYASLKKILKKFSE
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Known secondary structure (DSSP) TT
STTTTTTS



TTS




 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence EERFTYWSNYVHSLVCQVAETEGNSLTEYQQLLSAWRMFLIVATHNADVMHLTNPEVRQKLFKDILGGTQ
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Known secondary structure (DSSP) TTTT


TTTTTTTT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence ALLVVPRVACMHLSSMLCTVMIILLRRWKNDLPEDILNSLTQILEGVLQRDQQLVEKTKAQIFSALISVL
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Known secondary structure (DSSP)



TTTT

SS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence EMKPMKASEIPQYSQLLLNVCETLQEEVVSLVDHTRHEVQKDQRDGVCVLGLHLAKELCEADEEGDQWQQ
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Known secondary structure (DSSP) S


GGGSTTT



SS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence VLRKLPVLPILFSALEVSLRIKQNLHFCEAILHFLFTLAKTHQGAAAMAGAGITQTVCLPLLSVYQSWPG
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Known secondary structure (DSSP)

T

TTSTTTTT

 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence VYRLTVSLMERLLKTLRYNFLSEALDFVGVHQERILQCLSAVRTSLSCLEEADHTVGFLLQLSNFTKEWH
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Known secondary structure (DSSP) T


TT
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence FHLPQLIKDVQVNLCYLCQACTSLLHSLELRQLRTVQHSLLKILGKTLATLRAFSFGTLLATVNVTLSML
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Known secondary structure (DSSP)




 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence GEMDKKKESKNNKSLLLFIMENCFYLLISQAVRYLRDPSVHPRDKQRMKQELSSELSTLLSSLSRYFRPL
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Known secondary structure (DSSP)



TTS


 .........1480..
Sequence IQLVQAFVRHVQ
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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