PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c7whmA_

Fold library id	PDB Header	Molecule	Title
c7whmA_	2.70	PDB header: viral protein	Chain: A: PDB Molecule: pppde domain-containing protein;

Links to external resources
Added to library: Sat Feb 5 08:52:01 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N I S D N D E N I L K T L I A D Y N L R M R R D A L L G E L A R L D E L R D I S Q V K G V E Y K V T I P L L P V I S T L N Q H E F E I T Q A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N I E T D F I A D N V T F V T S F V P A D L D L E Q T I Q R V F F R T T A T T P H F Q S F N L V I E I L N Y D Q D S G D V E L H V K I M I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
G G G S
T T S S
S S
S S
S T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R P N S D V V N Y D Y T W I G K D Y E R I S V C Y N L I S H L Q R I D G P H G R D D E A E M P I Y R I I R R D S G S I P S Y A S G E H L Y V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T
B
T T T T B
S S S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence I S S H L H V D E I V R R R E H K S I S V D V T Q L S L I L P I I R T F N P V D L R E V R I E D I T P G I E F T I N M E V S T Y L A E S S G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
S B
S
G G G
T T
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence S H V D M Q R A I M N H A D K I V G N Y T G Q Q W N V Q S N M L S E V R T Q M L E E E D E E A R Q R G D Y T T S T L V Q T M A Q V S D L F S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence S T I L Y R R A E A R L D N T V G A F E L L R P V L S I P S E Y V H N G R V G P I T N I P A N A S I V T S S S S G A G Q V R N I F K P I G D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
S S
S S B
S S B B
T T S
S S T T
B S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence Q T I N E S H F A N V F S N D E Y A I Y L R F S Y R Q A P V Q S E T V Y L Q Q N L P S M R I V S P S S V S T T V S T A V I G G N T I H I N C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
B
S
B
S S
S B
S
S
S S S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence P I R P H R E D R L V S G G V Q V P R Q S T A V E I R V Q E I L I G Y R Q A T T F P I D T E G R L S L E L M Y G L E S R S A V G N T M S P V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
S S
B
B
T T
S
T T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence R F V T V N D G E F F G L T C P I D L T L S T V V D P S S Y L S D G V I L V A T A F E D L R G Y A W V A T L G G D W P R T Y N S S M R A F N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S S S S
S S
G G G T T
S S S S
S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence V L T G G D I N L S T E Y G S E M T Y T F K V E L P I V Y M F N N M T V I S N N V P R V P V L G V T Y A S I Y Q D S R T E L E A R R F L Q T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
S S S
B S
B
T T S
T T
S S S S T T
S S
S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence L V F R I H G N W S A R I P Y T P G N L P T R N T A N Q H Q D I Q Q V I N D S I S Q E L G R L S D E L L N M K N R L D H L E R Q F E M F I Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S T T T S
G G G G S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence S Q E S E W W E I L L N V V M D T V L G Y F S T F A G N A L K S A Q Q A I S K A V G Y T R R V L M T V T K T M R N G P I F T R L L G A K N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
T T
T T
S T T T T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence S G Q A L A S L E T L V E S V L R S I N V K K S R F M S G A E P L Y K N N K V A Q H I D N T E K M N M M M D F S F A N R N N R Q N I T A D T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
G G G G
S S S S G G G T
T T
T T G G G S T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence L S R M H T Q N A H G T S D T V L P A M R V Y Y R P L G F L D K R V G E A L H K G I T R P E A L K K Q L R S D V A N V G T R A P S H A F M T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T T
T T S
S S
S S S
S S
S S
T T
S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence Y T D V L Y E D A G S Y I V S K R Y L G I G E L N R F G R T T S D K N A D I G G V N I K Y R V N K I T A D G K Y I I D R L S H T E S G Y T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S
T T S S
T T S
S T T T T

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence A D V D R L Y R S L F G K Q G D G L S T E Q K W M D I S R G V D A K I I S A D M V S E E F L S S K Y T G Q M I D E L I N S P P Q F N Y S L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T
T T
S
S

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence Y R N C Q D F V L D V L R V A Q G F S P S N K W D V S T A A R M Q Q R R V I S L M D D L M S E S E T F A R S A H S N H S L L Q Q I R R S Y V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T S
T T T T S
S S T T

. . . . . . . . . 1200 . . . . . . . . . 1210 . . . .

Sequence K A R K R G D L H T V K A L Q L R L K G F F Q I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	I	S	D	N	D	E	N	I	L	K	T	L	I	A	D	Y	N	L	R	M	R	R	D	A	L	L	G	E	L	A	R	L	D	E	L	R	D	I	S	Q	V	K	G	V	E	Y	K	V	T	I	P	L	L	P	V	I	S	T	L	N	Q	H	E	F	E	I	T	Q	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													S	S																			T	T	S				S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	I	E	T	D	F	I	A	D	N	V	T	F	V	T	S	F	V	P	A	D	L	D	L	E	Q	T	I	Q	R	V	F	F	R	T	T	A	T	T	P	H	F	Q	S	F	N	L	V	I	E	I	L	N	Y	D	Q	D	S	G	D	V	E	L	H	V	K	I	M	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S					S										G	G	G	S		T	T	S	S									S	S			S	S		S													T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	P	N	S	D	V	V	N	Y	D	Y	T	W	I	G	K	D	Y	E	R	I	S	V	C	Y	N	L	I	S	H	L	Q	R	I	D	G	P	H	G	R	D	D	E	A	E	M	P	I	Y	R	I	I	R	R	D	S	G	S	I	P	S	Y	A	S	G	E	H	L	Y	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S													T	T																	B							T	T	T	T					B				S	S	S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	I	S	S	H	L	H	V	D	E	I	V	R	R	R	E	H	K	S	I	S	V	D	V	T	Q	L	S	L	I	L	P	I	I	R	T	F	N	P	V	D	L	R	E	V	R	I	E	D	I	T	P	G	I	E	F	T	I	N	M	E	V	S	T	Y	L	A	E	S	S	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	S																		S	B		S					G	G	G								T	T											S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	S	H	V	D	M	Q	R	A	I	M	N	H	A	D	K	I	V	G	N	Y	T	G	Q	Q	W	N	V	Q	S	N	M	L	S	E	V	R	T	Q	M	L	E	E	E	D	E	E	A	R	Q	R	G	D	Y	T	T	S	T	L	V	Q	T	M	A	Q	V	S	D	L	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																	S																																		T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	S	T	I	L	Y	R	R	A	E	A	R	L	D	N	T	V	G	A	F	E	L	L	R	P	V	L	S	I	P	S	E	Y	V	H	N	G	R	V	G	P	I	T	N	I	P	A	N	A	S	I	V	T	S	S	S	S	G	A	G	Q	V	R	N	I	F	K	P	I	G	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						S	S		S					S	S					S	S	B		S	S	B	B			T	T	S					S	S	T	T												B	S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	Q	T	I	N	E	S	H	F	A	N	V	F	S	N	D	E	Y	A	I	Y	L	R	F	S	Y	R	Q	A	P	V	Q	S	E	T	V	Y	L	Q	Q	N	L	P	S	M	R	I	V	S	P	S	S	V	S	T	T	V	S	T	A	V	I	G	G	N	T	I	H	I	N	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	S													B		S				B					S	S					S	B			S		S								S	S	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	P	I	R	P	H	R	E	D	R	L	V	S	G	G	V	Q	V	P	R	Q	S	T	A	V	E	I	R	V	Q	E	I	L	I	G	Y	R	Q	A	T	T	F	P	I	D	T	E	G	R	L	S	L	E	L	M	Y	G	L	E	S	R	S	A	V	G	N	T	M	S	P	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S		S	S		S	S									B			B														T	T			S																T	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	R	F	V	T	V	N	D	G	E	F	F	G	L	T	C	P	I	D	L	T	L	S	T	V	V	D	P	S	S	Y	L	S	D	G	V	I	L	V	A	T	A	F	E	D	L	R	G	Y	A	W	V	A	T	L	G	G	D	W	P	R	T	Y	N	S	S	M	R	A	F	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T																	S	S	S	S					S	S										G	G	G	T	T								S	S	S	S		S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	V	L	T	G	G	D	I	N	L	S	T	E	Y	G	S	E	M	T	Y	T	F	K	V	E	L	P	I	V	Y	M	F	N	N	M	T	V	I	S	N	N	V	P	R	V	P	V	L	G	V	T	Y	A	S	I	Y	Q	D	S	R	T	E	L	E	A	R	R	F	L	Q	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S									S	S	S										B							S		B				T	T	S					T	T						S	S	S	S	T	T		S	S		S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	L	V	F	R	I	H	G	N	W	S	A	R	I	P	Y	T	P	G	N	L	P	T	R	N	T	A	N	Q	H	Q	D	I	Q	Q	V	I	N	D	S	I	S	Q	E	L	G	R	L	S	D	E	L	L	N	M	K	N	R	L	D	H	L	E	R	Q	F	E	M	F	I	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T												S													T	T	T	S		G	G	G	G	S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	S	Q	E	S	E	W	W	E	I	L	L	N	V	V	M	D	T	V	L	G	Y	F	S	T	F	A	G	N	A	L	K	S	A	Q	Q	A	I	S	K	A	V	G	Y	T	R	R	V	L	M	T	V	T	K	T	M	R	N	G	P	I	F	T	R	L	L	G	A	K	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		S	S															T	T				T	T																														S	T	T									T	T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	S	G	Q	A	L	A	S	L	E	T	L	V	E	S	V	L	R	S	I	N	V	K	K	S	R	F	M	S	G	A	E	P	L	Y	K	N	N	K	V	A	Q	H	I	D	N	T	E	K	M	N	M	M	M	D	F	S	F	A	N	R	N	N	R	Q	N	I	T	A	D	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T			G	G	G	G			S	S	S	S	G	G	G	T		T	T																			T	T	G	G	G	S	T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	L	S	R	M	H	T	Q	N	A	H	G	T	S	D	T	V	L	P	A	M	R	V	Y	Y	R	P	L	G	F	L	D	K	R	V	G	E	A	L	H	K	G	I	T	R	P	E	A	L	K	K	Q	L	R	S	D	V	A	N	V	G	T	R	A	P	S	H	A	F	M	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T				S	T	T			T	T	S		S	S										S	S	S		S	S								S	S																		T	T					S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	Y	T	D	V	L	Y	E	D	A	G	S	Y	I	V	S	K	R	Y	L	G	I	G	E	L	N	R	F	G	R	T	T	S	D	K	N	A	D	I	G	G	V	N	I	K	Y	R	V	N	K	I	T	A	D	G	K	Y	I	I	D	R	L	S	H	T	E	S	G	Y	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T																S	S			S		T	T	S	S																	T	T	S									S	T	T	T	T
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	A	D	V	D	R	L	Y	R	S	L	F	G	K	Q	G	D	G	L	S	T	E	Q	K	W	M	D	I	S	R	G	V	D	A	K	I	I	S	A	D	M	V	S	E	E	F	L	S	S	K	Y	T	G	Q	M	I	D	E	L	I	N	S	P	P	Q	F	N	Y	S	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S			T	T													T	T							S																							S
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	Y	R	N	C	Q	D	F	V	L	D	V	L	R	V	A	Q	G	F	S	P	S	N	K	W	D	V	S	T	A	A	R	M	Q	Q	R	R	V	I	S	L	M	D	D	L	M	S	E	S	E	T	F	A	R	S	A	H	S	N	H	S	L	L	Q	Q	I	R	R	S	Y	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S														T	T					T	T	S																								T	T	T	T	S		S	S	T	T
	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.
Sequence	K	A	R	K	R	G	D	L	H	T	V	K	A	L	Q	L	R	L	K	G	F	F	Q	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T															T	T	T