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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7webD_

Fold library idPDB HeaderMoleculeTitle
c7webD_3.70PDB header: immune system/viral proteinChain: D: PDB Molecule: spike glycoprotein;


Added to library: 3.70
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHVIKRFDNPVLPFNDGVY
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S





SS



S


TT









S
 .........80.........90.........100.........110.........120.........130.........140
Sequence FASIEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDHKNNKSWMESEFRVYSSAN
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Known secondary structure (DSSP) SS

SS
SSSS

SSS





SS

S


SSSS



S







 .........150.........160.........170.........180.........190.........200.........210
Sequence NCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPILVREPEDLPQGFSALEPLVDLPIG
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Known secondary structure (DSSP) S








S


SS

TT
S



SSS

SS






 .........220.........230.........240.........250.........260.........270.........280
Sequence INITRFQTLLASSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGI
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Known secondary structure (DSSP)






SS






SSSSSSS
TSS


S
 .........290.........300.........310.........320.........330.........340.........350
Sequence YQTSNFRVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGV
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Known secondary structure (DSSP)
S
B
B









B

T
S



GGG

SSB



TT

SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence SPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYL
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Known secondary structure (DSSP)
GGGGGG

BS

SGGGGGGSTT

STTTTTT



SS

S
TTTS

TT
B


 .........430.........440.........450.........460.........470.........480.........490
Sequence YRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPA
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Known secondary structure (DSSP)


SS


SS








SSS


SS

TT
S

B
TT

TTTS

SSSSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence TVCGPKKSTNLVKNKCVNFNFNGLKGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSF
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Known secondary structure (DSSP)
B










SS
TT





TT

B


TTS



SSSS




 .........570.........580.........590.........600.........610.........620.........630
Sequence GGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYVNNSYEC
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Known secondary structure (DSSP) B

TTS



TS
TTTTTTT
SSSSBS


GGGTTSS

SSSS


S
B

 .........640.........650.........660.........670.........680.........690....
Sequence DIPIGAGICASYQTSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMc7webD_
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Known secondary structure (DSSP) STT


B










TT










Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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