Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7wb4j_

Fold library idPDB HeaderMoleculeTitle
c7wb4j_5.60PDB header: structural proteinChain: J: PDB Molecule: outer nup133;


Added to library: Sat Mar 5 09:08:32 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ETVNYNVQLFGSSLPVKVMEALSNASADEPMAACIHEGGWAWLACNDRLIIWKISHSSSAKLMVCKELPL
Predicted secondary structure









































SS confidence





































































Known secondary structure (DSSP)

SS
SS




TTS


TTSTT

SS

GGG


 .........80.........90.........100.........110.........120.........130.........140
Sequence PLSDSEWSADLVDICAQTGDPAAAQSVALMAATPEGSSRYWPNILHEGTYIESYTEFGSSLCAFVTAVKG
Predicted secondary structure










































SS confidence





































































Known secondary structure (DSSP)


SS


GGGGGG


TTTT
TT
S
TT
TT





TT


TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence NSFILSSEKNQLVRLTPDASGKMNQRVLPQGQGMESTLCSVLWDKGDCFYTLTDSSINKWDLDDTSESQV
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP) T
TT


TTS

TT
S





STTSS
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LNWDMSRVLREYISDAIWININYLSLNQNCDGLVILSAAWHPGDNPCQIYYTLVTVKDEGYNISDEITVE
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)

TT
TTSSS
B


BTTB

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence VTQFNPVFQARGMQLCQLVVPNFSSQACYLYTQEMIFACSTGTGRSTLPQEKIPFEAQGDNIVGAGSCEG
Predicted secondary structure













































SS confidence





































































Known secondary structure (DSSP)
S


B


GGG





SSS

SS
TT
TT





TTS

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence WPVFFIRKSGMLTVVARKTKHLKAAFLRYCRKDILGAQSMVDSLFSDSDMEPDDELDLAVNQISVDLIDD
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP) TTT

TT
SGGGSS


TTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence YPASDPRWAESVPEEAAGFSNTSLILLHQLEDKMKAHSFFVDFLHQVGLFSRLSTCQTKGMLVATRLLLS
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) SSSSS
TT
SSS
STTS


TTSS

SSS
SS




TT
S
T
 .........500.........510.........520.........530.........540.........550.........560
Sequence EHAEKLSAAIVLKNHHAKLPVLVNSAIQLALDKRMCTVTAADVYFREVSQMEIIFECLVDKEEADLESTS
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) S

S







TTTTTS

SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence IDSVEWANIVVNVNTILKDMLHVACQYRQSKNSLYKNESGIQEPEHVPWTASSGTAGIRSVVTRQHGIIL
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) TT

TTTS


SSS

BTTTB
TTS










TTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence KVYPQADSGLRTILIEQLAALLNYLLDDYVTQLKSIDKLANEERYNILEMEYAQKRSELLSPLLILGQYA
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) TTGGGGSS
T

STTS
TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence WASNLAEKYCDFDILVQICEMTDNQSRLQRYMTLFAEQNFSDFLFRWYLEKGKRGKLLSQPASQHGQLAA
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) TT
S
STTSS
T
SSTTTTSS
TTTTTTTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence FLQAHLSWLHELNSQEFEKAHRTLQTLANMETRYFCKKKTLLGLSKLAALASDFQEDVLQEKVEEIAEQE
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP)






S
SS


 .........850.........860.........870.........880.........890.........900.........910
Sequence HFLLHQETLPKKLLEEKQLDLNAMPVLAPFQLIQLYVCEENKRANENDFMKALDLLEYIGDDSEVDVEEL
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) T

TTTT

SSSS



T
TT
TT

GGGG
SSTTTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence KLEILCKAIKRDEWSATDGKDDPIEATKDSIFVKVLQNLLNKGIELKGYLPKAETLLQSEELNSLKTNSY
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) TT

TT

T


TTTTTS

TT

TTS
ST
 .........990.....
Sequence FEFSLKANYECYMKM
Predicted secondary structure

SS confidence














Known secondary structure (DSSP) TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D