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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7w88A_

Fold library idPDB HeaderMoleculeTitle
c7w88A_3.50PDB header: plant proteinChain: A: PDB Molecule: rna-dependent rna polymerase;


Added to library: Wed Jun 22 04:02:19 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SASLILGNRVAERELEVAYSCDGVRAEVIPRMRRVDLYLKHDSQSYKLEVLFEDINECFGCHLDGTGAIL
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Known secondary structure (DSSP)
B
SSSS

S
BTGGG


SSS

BGGG




STTS

B
 .........80.........90.........100.........110.........120.........130.........140
Sequence LQLTYAPRIHIAIWVRALDFTPNSSFGECSTLVLKLSKGASVSYILESLPFSGELGELAIASNVVPLVDC
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Known secondary structure (DSSP)
SS











TT

TTT

B


SSSSSTTS
TTSS







B










 .........150.........160.........170.........180.........190.........200.........210
Sequence PNGFSVPYEVLFRLNSLVHMGKLVARHVNADLFKVLEDLSIDTLRRIFEKMSKLKSTCYEPLQFIRHEAH
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Known secondary structure (DSSP)
TT



TSS
STT
SSTTSS
TTSSS

S
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence SMNKLMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSAKPLKTGLY
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Known secondary structure (DSSP) S






SS





BS
GGGGG


B
SSSSB

B



B
 .........290.........300.........310.........320.........330.........340.........350
Sequence HRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAENIRRWMGHFEDIRSVSKCAARMGQL
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Known secondary structure (DSSP) T
TT

SSSTTTT

SS




TT

SGGGSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence FSSSRQTFEVSSYDVEVIPDIEVTTDGTKYIFSDGIGKISTRFARQVAKLIGLDPAHPPSAFQIRYGGYK
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Known secondary structure (DSSP)
SB



B


SSS





TT
S
S



B
T

TTS

S


BTTB
 .........430.........440.........450.........460.........470.........480.........490
Sequence GVITIDPTSFFNLSLRPSMKKFESKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHE
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Known secondary structure (DSSP)

B
SS
SSS

SSS

S




SB

S
B






B
SSS

STTTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence SDGMLTNKEAALSVLGKIGGGDTKTAADMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRV
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Known secondary structure (DSSP) S

SSS

SSSGGG
S
S

TTTTTTTS
S
SS

TT
B

SS


 .........570.........580.........590.........600.........610.........620.........630
Sequence LIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKVAITKNPCLHPGDVRVLEAVYD
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Known secondary structure (DSSP)



SS

S
SS




SS


SSBS


SS
B
S
SS

STT
S


 .........640.........650.........660.........670.........680.........690.........700
Sequence PGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIPEKVDAPMDPRIMDHAVTLEEIQKH
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Known secondary structure (DSSP) TT

S



SSSS
SS

SSS
B



TTSS
SS
S







SS


 .........710.........720.........730.........740.........750.........760.........770
Sequence FVSYMINDTLGAISTAHLIHADRDPLKARSPECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMER
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Known secondary structure (DSSP) TT

STS


S
STTSSSSSTTTT


S
SSS


S


S
SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence WERPMYVSNGVLGKLYRAAERYEAYAERLGALMTYYSAEREDEILTGNIRNKLVYLRRDNKRYFEMKDRI
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Known secondary structure (DSSP)

S

SS

SSS



SS



SSSSS
S

SSSSTTTS
SS
 .........850.........860.........870.........880.........890......
Sequence IAAVDALHAEVRGWLRVASAWYHVTYHPDRRGEKRFWSFPWIICDTLLAIKAARRC
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Known secondary structure (DSSP)


TTSS


TT
STTSSSS

S

SS
TTSSTTTSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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