PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7vnxA_

Fold library id	PDB Header	Molecule	Title
c7vnxA_	1.80	PDB header: rna binding protein	Chain: A: PDB Molecule: tkarki;

Links to external resources
Added to library: Wed Jun 22 01:02:12 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M T F E H I I S S K R L E G F L R H L A E E G V G G V E P L A K G T T S L V F T G V L G G R K V V I K L Q R P D S P R S N F E K E A E L T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S
T T
S S T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I A S T F G V T P P I I G L G E F E G L P Y L I R E F A E G E P I L F A D V E K E H L F R I V E K T A L L D R L G I D H G Q I Q G G K H I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
T T
G G G
T T
S
T T S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I G E D V Y L I D F E K A G F R K P N N L T S A M A M I F I G E N A I S K R V R E K F G L D E K F R E E M K D A L R H Y K R T G S L S R L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T
S S
T S
S T

. . . . . .

Sequence S L L S G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	T	F	E	H	I	I	S	S	K	R	L	E	G	F	L	R	H	L	A	E	E	G	V	G	G	V	E	P	L	A	K	G	T	T	S	L	V	F	T	G	V	L	G	G	R	K	V	V	I	K	L	Q	R	P	D	S	P	R	S	N	F	E	K	E	A	E	L	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T	S															T	T											S	S									T	T										T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	A	S	T	F	G	V	T	P	P	I	I	G	L	G	E	F	E	G	L	P	Y	L	I	R	E	F	A	E	G	E	P	I	L	F	A	D	V	E	K	E	H	L	F	R	I	V	E	K	T	A	L	L	D	R	L	G	I	D	H	G	Q	I	Q	G	G	K	H	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S	S										T	T														G	G	G																					T	T				S			T	T	S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	G	E	D	V	Y	L	I	D	F	E	K	A	G	F	R	K	P	N	N	L	T	S	A	M	A	M	I	F	I	G	E	N	A	I	S	K	R	V	R	E	K	F	G	L	D	E	K	F	R	E	E	M	K	D	A	L	R	H	Y	K	R	T	G	S	L	S	R	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S							T	T				S	S													T	S		S											T
	.	.	.	.	.	.
Sequence	S	L	L	S	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T