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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7v5cA_

Fold library idPDB HeaderMoleculeTitle
c7v5cA_3.20PDB header: membrane proteinChain: A: PDB Molecule: abc-type oligopeptide transporter abcb9;


Added to library: Sat Oct 22 14:07:14 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ATLQKLLSYTKPDVAFLVAASFFLIVAALGETFLPYYTGRAIDSIVIQKSMDQFTTAVVVVCLLAIGSSL
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Known secondary structure (DSSP)

TTSTTS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence AAGIRGGIFTLVFARLNIRLRNCLFRSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINIFLRNT
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Known secondary structure (DSSP) SSS
TTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence VKVTGVVVFMFSLSWQLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQSALARASTTAEETISAMKTVRSF
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Known secondary structure (DSSP) TT
SSTTTTTTTTTTSSSSSTTTTTTTTTTTSSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence ANEEEEAEVFLRKLQQVYKLNRKEAAAYMSYVWGSGLTLLVVQVSILYYGGHLVISGQMSSGNLIAFIIY
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Known secondary structure (DSSP) STTTTTTTTTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence EFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPTMVHDGSLAPDHLEGRVDFENVTFTYRTRPHTQV
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Known secondary structure (DSSP) TTTTTTTTTTT


SS







S






TTSTTS
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence LQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLQGGRVLLDGKPIGAYDHKYLHRVISLVSQEPVL
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Known secondary structure (DSSP)
TT

B
SSSSSSGGGTTTTTTSS

SS
TTGGGS
TTS
SS


 .........430.........440.........450.........460.........470.........480.........490
Sequence FARSITDNISYGLPTVPFEMVVEAAQKANAHGFIMELQDGYSTETGEKGAQLSGGQKQRVAMARALVRNP
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Known secondary structure (DSSP)
SSBSTTTTTSSSSS

TTTTTT
TTSTTGGG
B
TTS
TTTTTTT

 .........500.........510.........520.........530.........540.........550.........560
Sequence PVLILDEATSALDAESEYLIQQAIHGNLQRHTVLIIAHRLSTVERAHLIVVLDKGRVVQQGTHQQLLAQG
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Known secondary structure (DSSP) SSSS

SSTTTTTT



SSS
SB
TT

SS
 .........570..
Sequence GLYAKLVQRQML
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Known secondary structure (DSSP) SSSTTTGGGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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