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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7u6rC_

Fold library idPDB HeaderMoleculeTitle
c7u6rC_2.50PDB header: viral proteinChain: C: PDB Molecule: pdf-2180 spike glycoprotein;


Added to library: Sat Dec 3 11:23:31 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence CPQVDMQPSYFIKHNWPEPIDMNKADGVIYPNGRTYSNITLQTTNLFPRNGDLGTQYVYSAFISNYSYYG
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Known secondary structure (DSSP)




GGGGTTT






GGGTTT
B

SSS


S


TT





SGGG

 .........80.........90.........100.........110.........120.........130.........140
Sequence NPFGDGIVIRIGKIYPALMLGSSFGNFSVNNKSGAYFNHTLLILPSTVFQVAYCLLQPRTDSYCPGNANY
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Known secondary structure (DSSP)
TT





S

TTT


S



STTSTTSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VSYALINGLEDIKKYFNLVNCTYFEEFNVTADERAEWFGITQDSQGVHLYTSSNNLFLFASVPIYDKINY
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Known secondary structure (DSSP)



B

TTT



SS
TT



B


S


 .........220.........230.........240.........250.........260.........270.........280
Sequence YTVIPRSIWAAFYVYPLHQLSYLLNFDVNGYITQAADCGYNDYTQLVCSYGDFNMKSGVYSTSYYSAKPV
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Known secondary structure (DSSP)

B




TTS
TTSST
SS

S


S




 .........290.........300.........310.........320.........330.........340.........350
Sequence GAYYEAHVYPDCNFTDLFRENAPTIMQYKRQVFTRCNYNLTLLLSLVQVDEFVCDKITPEALATGCYSSL
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Known secondary structure (DSSP) S



SB


SSB


STT

S
TTSS

TT

BS
 .........360.........370.........380.........390.........400.........410.........420
Sequence TVDWFAFPYAWKSYLAIGSADRIVRFNYNQDYSNPSCRIHSKVNSSVGISYSGLYSYITNCNYGGFNKDD
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Known secondary structure (DSSP)

GGGTTTSSTT

STT




SS

GGGT
B

S

TTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence VVKPGGRASQPCVTGALNSPTNGQVWSFNFGGVPYRTSRLTYTDHLKNPLDMVYVITVKYEPGAETVCPK
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Known secondary structure (DSSP)


TT



TS
TBS

TT
GGG

SS

TT


S
 .........500.........510.........520.........530.........540.........550.........560
Sequence QVRPDYSTNITGLLGSCISYDIYGITGTGVFQLCNAKFVYDKFDNIIGFHSDDGNYYCVAPCVSVPVSVI
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Known secondary structure (DSSP) S

TT
BS

GGGTTSTT




TTS

TTS

S

S
 .........570.........580.........590.........600.........610.........620.........630
Sequence YDDNTNQYATLFGSVACQHISTMAAQFSRETRASLVNLLQTSVGCVMGFHETNDTVEDCNLSLGQSLCAI
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Known secondary structure (DSSP) TTTTT

TTGGGS
T

TTSSS
TTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence PPNTNLRVGRSTFGLGSLAYNSPLRVDALNSSEFKVSLPLNFTFGVTQEYIETSIQKITVDCKQYVCNGF
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Known secondary structure (DSSP)

SS
TTT














SSSS





TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence AKCEKLLEQYGQFCSKINQALHGANLRQDDFVRNLFESVKTPQTVPLTTGFGGEFNLTLLEPLSVSNARS
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Known secondary structure (DSSP) GGGG
S

S





TTTTTTS

TTTSBTTT


SB
 .........780.........790.........800.........810.........820.........830.........840
Sequence ALEELLFDKVTIADPGYMQGYDDCMRDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGAWTAGLSS
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Known secondary structure (DSSP) S





TTTT

TT


SS
TTSTT


SSSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence FAAIPFAQSIFYRLNGVGITQQVLSENQKIIANKFNQALGAMQTGFTTTNEAFQKVQDAVNTNAQALAKL
Predicted secondary structure
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Known secondary structure (DSSP)




TTT

TGGGGT
STT
 .........920.........930.........940.........950.........960.........970.........980
Sequence ASELSNTFGAISSSIGDIIQRLDVLEQEVQIDRLINGRLTTLNAFVAQQLVRSESAARSAQLAKDKVNEC
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Known secondary structure (DSSP) GGG

SSSS
S
TTS
T
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VKSQSTRSGFCGQGTHIVSFVINAPNGLYFMHVGYHPSQHIEVVAAYGLCDAANPTNCIAPVNGYFIKNQ
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Known secondary structure (DSSP) TSS


SSBTTBSSTTS
TTSSS
 .........1060.........1070.........1080.........1090.......
Sequence TTRGVDDWSYTGSSFYAPEPITTLNTRYVAPQVTFQNISTNLPPPLL
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Known secondary structure (DSSP) SS

TT
TT


TTS


TTS
SS

TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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