PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7u5qA_

Fold library id	PDB Header	Molecule	Title
c7u5qA_	3.00	PDB header: dna binding protein	Chain: A: PDB Molecule: transcriptional regulator, gntr family protein;

Links to external resources
Added to library: Wed Jun 22 12:13:00 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R V T T A K L I Y H E L Q Q Q I I R M E L L P G T P L N E K A L T E K Y G V S R T P V R E A L I R L A E D R L V D V F P Q S G T F V A R I P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
T T
T S
S T T S T T T
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V D A I P E A V V I R Q A L E G E T A E R A A A N S T A A A I E K L D E L I H L Q T F Y A R K D K P G P F H E T D D A F H E T I A E I A G Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T
T T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P G I W Q H L K P V K M Q I D R A R R M T M P I L G R M E Q V L R E H H A I R D A I S A R D V H A A R E A M K H H L S A V L P D I D E L R K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T S T T T T
T

. . . . . . .

Sequence S R P D Y F A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	V	T	T	A	K	L	I	Y	H	E	L	Q	Q	Q	I	I	R	M	E	L	L	P	G	T	P	L	N	E	K	A	L	T	E	K	Y	G	V	S	R	T	P	V	R	E	A	L	I	R	L	A	E	D	R	L	V	D	V	F	P	Q	S	G	T	F	V	A	R	I	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T	S	S		T	T													T	S		S													T	T	S					T	T	T							B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	D	A	I	P	E	A	V	V	I	R	Q	A	L	E	G	E	T	A	E	R	A	A	A	N	S	T	A	A	A	I	E	K	L	D	E	L	I	H	L	Q	T	F	Y	A	R	K	D	K	P	G	P	F	H	E	T	D	D	A	F	H	E	T	I	A	E	I	A	G	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T	T																						T																						T	T																					T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	G	I	W	Q	H	L	K	P	V	K	M	Q	I	D	R	A	R	R	M	T	M	P	I	L	G	R	M	E	Q	V	L	R	E	H	H	A	I	R	D	A	I	S	A	R	D	V	H	A	A	R	E	A	M	K	H	H	L	S	A	V	L	P	D	I	D	E	L	R	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T	T											T	T	S	T	T																		T	T															T
	.	.	.	.	.	.	.
Sequence	S	R	P	D	Y	F	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	B