PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c7trwA_

Fold library id	PDB Header	Molecule	Title
c7trwA_	2.28	PDB header: transcription	Chain: A: PDB Molecule: lysr-family transcriptional regulatory protein;

Links to external resources
Added to library: Sat Feb 12 10:35:16 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E P R G V V R I T C P V A L L Q A T V S T X L A D F X A S C P L V T I H L E A T N R Q V D P V A E A I D I A I R V R P P P L Q N S D L V L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T
S
T T T T T
S
S S
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V L G N R C Q C L V A S P E L I G R Q G E V N T P V D L T G W P S L G L G Q P Q Q T F I W N L E G P E K A H A A V Y H Q P R L V T A D X N T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S G G G G T T
B S
T T S
G G G
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L R S A A L A G V G V V Q L P L X X V T E Q L A E G T L V R L L P D W S V R H E I I H A V Y P S R R G L L P S V R S V L D Y L V Q R F S Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
B G G G T T S S S
T T S
T T G G G S

. . .

Sequence D E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	P	R	G	V	V	R	I	T	C	P	V	A	L	L	Q	A	T	V	S	T	X	L	A	D	F	X	A	S	C	P	L	V	T	I	H	L	E	A	T	N	R	Q	V	D	P	V	A	E	A	I	D	I	A	I	R	V	R	P	P	P	L	Q	N	S	D	L	V	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T													T	T										S				T	T	T	T	T		S								S	S				S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	L	G	N	R	C	Q	C	L	V	A	S	P	E	L	I	G	R	Q	G	E	V	N	T	P	V	D	L	T	G	W	P	S	L	G	L	G	Q	P	Q	Q	T	F	I	W	N	L	E	G	P	E	K	A	H	A	A	V	Y	H	Q	P	R	L	V	T	A	D	X	N	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							S	S	G	G	G	G	T	T			B				S		T	T	S									G	G	G										S				S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	R	S	A	A	L	A	G	V	G	V	V	Q	L	P	L	X	X	V	T	E	Q	L	A	E	G	T	L	V	R	L	L	P	D	W	S	V	R	H	E	I	I	H	A	V	Y	P	S	R	R	G	L	L	P	S	V	R	S	V	L	D	Y	L	V	Q	R	F	S	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S		B					G	G	G	T							T	S	S			S		T	T	S													T	T	G	G	G	S
	.	.	.
Sequence	D	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)