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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7tprC_

Fold library idPDB HeaderMoleculeTitle
c7tprC_2.39PDB header: viral protein/immune systemChain: C: PDB Molecule: spike glycoprotein;


Added to library: Wed Jun 22 02:44:42 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVL
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Known secondary structure (DSSP)



S









TT


B

SS



S

SS







SSSS







 .........80.........90.........100.........110.........120.........130.........140
Sequence PFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWME
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Known secondary structure (DSSP)
TT

SS

SSTTTTS

SSS
SS


S

SSSSSSS


 .........150.........160.........170.........180.........190.........200.........210
Sequence SEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALE
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Known secondary structure (DSSP)


SGGG


S
SS

TT



SS

SS


B
 .........220.........230.........240.........250.........260.........270.........280
Sequence PLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALD
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Known secondary structure (DSSP)








SSSSSS
SS







SSS
TTSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence PLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVAD
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Known secondary structure (DSSP) TSS


S









B


S
SS

BGGG

S

 .........360.........370.........380.........390.........400.........410.........420
Sequence YSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVI
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Known secondary structure (DSSP) T


SSSS
GGGGGG
SGGGGGGSSSS


T



TT

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence AWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVG
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Known secondary structure (DSSP)
TTTS

STT






SS


TT








SSS

SS

BTT
S



TTS
GG
 .........500.........510.........520.........530.........540.........550.........560
Sequence YQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTD
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Known secondary structure (DSSP) GS

SS












SS
TT





TT

TTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence AVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQ
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Known secondary structure (DSSP)
TTT






TTT
S

TT

TTTSGGGTT
TT

T
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence TRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAI
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Known secondary structure (DSSP) TTS

SS



STT



S
TTGGG












TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQ
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Known secondary structure (DSSP)




TT
TT
STT
 .........780.........790.........800.........810.........820.........830.........840
Sequence VKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQK
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Known secondary structure (DSSP)
SS




SS

STT


TTTS

SSSGGG

S

TT
T

S
SS

GGGS
 .........850.........860.........870.........880.........890.........900.........910
Sequence FNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIA
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Known secondary structure (DSSP) STT

SS
TTGGGTSS




TT

TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence NQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQID
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Known secondary structure (DSSP) T
SSTTTTSS

TTSS
S
TTS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence RLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLH
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Known secondary structure (DSSP) TSS


STTSSSSSTT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence VTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVN
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Known secondary structure (DSSP) S
TTSSSSSS

SSS



BGGGTTSSTT
 .........1130.........1140.....
Sequence NTVYDPLQPELDSFKEELDKYFKNH
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Known secondary structure (DSSP)


B
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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