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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7tdtA_

Fold library idPDB HeaderMoleculeTitle
c7tdtA_4.00PDB header: membrane proteinChain: A: PDB Molecule: phospholipid-transporting atpase abca1;


Added to library: Sat Apr 1 15:35:55 2023
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence CWPQLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFPNKAMPSAGTLPWVQG
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Known secondary structure (DSSP)
T
SS



BB



TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence IICNANNPCFRYPTPGEAPGVVGNFNKSIVARLFSDARRLLLYSQKDTSMKDMRKVLRTLQQIKKSSSNL
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Known secondary structure (DSSP) TSSS


BSS

GGGSSSS

S
SS
TTSS
TS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence KLQDFLVDNETFSGFLYHNLSLPKSTVDKMLRSKSEEMIQLGDQEVSELCGLPREKLAAAERVLRSNMDI
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Known secondary structure (DSSP) TT

SSSSS



SSSTTS





S


SS
SSTT
TTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence LKPILRTLNSTSPFPSKELAEATKTLLHSLGTLAQELFSMRSWSDMRQEVMFLTNVNSSSSSTQIYQAVS
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Known secondary structure (DSSP) GGGSS


SS
TSSTT


SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence RIVCGHPDNSTTPYCNDLMKNLESSPLSRIIWKALKPLLVGKILYTPDTPATRQVMAEVNKTFQELAVFH
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Known secondary structure (DSSP) S





S
STT
S





TT

 .........360.........370.........380.........390.........400.........410.........420
Sequence DLEGMWEELSPKIWTFMENSQEMDLVRMLLDSRDNDHFWEQQLDGLDWTAQDIVAFLAKHPEDVQSSNGS
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Known secondary structure (DSSP) S
TSSSSTSSS

S
T

BTTB



SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence VYTWREAFNETNQAIRTISRFMECVNLNKLEPIATEVWLINKSMELLDERKFWAGIVFTGITPGSIELPH
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Known secondary structure (DSSP)


TS





B
S
TTT






SS
SS


S
 .........500.........510.........520.........530.........540.........550.........560
Sequence HVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGTEKKTGVYMQ
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Known secondary structure (DSSP)

GGGS

SS
SS
SS

SS



TTTT
TS





 .........570.........580.........590.........600.........610.........620.........630
Sequence QMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNSILWFSWFISSL
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Known secondary structure (DSSP)

B


TTSS

 .........640.........650.........660.........670.........680.........690.........700
Sequence IPLLVSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAVVTILQCFLISTLFSRANLAAACGGIIYFTLYLP
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Known secondary structure (DSSP) TTTSS
S

TTT


T
 .........710.........720.........730.........740.........750.........760.........770
Sequence YVLCVAWQDYVGFTLKIFASLLSPVAFGFGCEYFALFEEQGFNLTTSVSMMLFDTFLYGVMTWYIEAVFN
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Known secondary structure (DSSP)

S
STT
T





 .........780.........790.........800.........810.........820.........830.........840
Sequence LVKVYRALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSTIRQNLGVCPQHNV
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Known secondary structure (DSSP)




SSS


SSSTTSS
SS
SSS
S

STTT
S




SS

 .........850.........860.........870.........880.........890.........900.........910
Sequence LFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVGLPSSKLKSKTSQLSGGMQRKLSVALAFVGGSKV
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Known secondary structure (DSSP)

TTS
SSS
TT





STTS
S
SSS

SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence VILDEPTAGVDPYSRRGIWELLLKYRQGRTIILSTHHMDEADVLGDRIAIISHGKLCCVGSSLFLKNQLG
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Known secondary structure (DSSP) S


SS

SS

SSSS
B
SSSS

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence TGYYLTLVDVSAISNLIRKHVSEARLVEDIGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGIS
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Known secondary structure (DSSP)




TT
TT
TTT

SS


 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence ETTLEEIFLKVAWKLTQQQFVALLWKRLLIARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLEL
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Known secondary structure (DSSP)




S
S

SS






 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence QPWMYNEQYTFVSNDAPEDTGTLELLNALTKDPGFGTRCMEGNPIPDTPCQAGEEEWTTAPVPQTIMDLF
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Known secondary structure (DSSP)

S
SSS




S


SSSSSS
SSS

TTTS
TTT




S







TTT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence QNGNWTMQNPSPACQCSSDKIKKMLPVCPPGAGGLPPPQRKQNTADILQDLTGRNISDYLVKTYVQIIAK
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Known secondary structure (DSSP) TTSS
SSSS
SS




SSS


SS



SS
SS



TT
TT


 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence SLKNKIWVNEFRYGGFSLGVSNTQALPPSQEVNDAIKQMKKHLKLAKDSSADRFLNSLGRFMTGLDTKNN
Predicted secondary structure
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Known secondary structure (DSSP) TSS











TTS
S
TTT


STTT

SS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence VKVWFNNKGWHAISSFLNVINNAILRANLQKGENPSHYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSI
Predicted secondary structure
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Known secondary structure (DSSP)
TTSTT

SSS
TTT








TS

 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence CVIFAMSFVPASFVVFLIQERVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSY
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Known secondary structure (DSSP) TSTTTSTT

SSTTS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence VSSTNLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLEDILKSVFLIF
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Known secondary structure (DSSP) SSTTTTTT

STTS



STTGGG

 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence PHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVEGVVFFLITVLIQYRFFDAITE
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Known secondary structure (DSSP) S
S





TTTTT





T
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence LLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYAGNYSGGNKRKLSTAMALIGGPPVVFLD
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Known secondary structure (DSSP) T

SSS

TT


SSSSSS

S

S
SS

S

S
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence EPTTGMDPKARRFLWNCALSVVKEGRSVVLTSHSMEECEALCTGSVQHLKNRFGDGYTIVVRIAGSNPDL
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Known secondary structure (DSSP) SSS
S

SS





S




SS




S
GGG
 .........1760.........1770.........1780.........1790.........1800.........1810........
Sequence KPVQDFFGLAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVNF
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Known secondary structure (DSSP)
SS




TT

TT

ST


S
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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