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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7t4gE_

Fold library idPDB HeaderMoleculeTitle
c7t4gE_3.70PDB header: viral protein/immune systemChain: E: PDB Molecule: envelope glycoprotein gp120;


Added to library: Sat Oct 22 11:20:18 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TLYVTVFYGVPAWRNATIPLFCATKNRDTWGTTQCLPDNGDYSEMALNVTESFDAWNNTVTEQAIEDVWQ
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Known secondary structure (DSSP)

B


S







S
TTT







S

STT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LFETSIKPCVKLSPLCITMRCNKSETDRWGLTKSITTTASTTSTTASAKVDMVNETSSCIAQDNCTGLEQ
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Known secondary structure (DSSP) TTS
B
GGG
S

TTSS

SSS






SS





SS
TT

TT

B
 .........150.........160.........170.........180.........190.........200.........210
Sequence EQMISCKFNMTGLKRDKSKEYNETWYSADLVCEQGNNTGNESRCYMNHCNTSVIQESCDKHYWDAIRFRY
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Known secondary structure (DSSP)


TTSS
GGGB



S


SS

BTT
SSS


TTTTTSS

 .........220.........230.........240.........250.........260.........270.........280
Sequence CAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLN
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Known secondary structure (DSSP)

TT

S


SS
SB






SSS
S


SS


TTS


 .........290.........300.........310.........320.........330.........340.........350
Sequence KYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQPINDRPKQAWCWFGGKWKDAIKEVKQTIVKHPRYTGTNN
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Known secondary structure (DSSP) GGG



TTT



S

B

S
T
TT



SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence TDKINLTAPGGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRNTANQKPKEQHKRNYVPCHIRQIINTWH
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Known secondary structure (DSSP) GGG




SS
STT

TT


SSS
TTT

SS
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence KVGKNVYLPPREGDLTCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLAPTSC
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Known secondary structure (DSSP) TT





S

SSSS





GGGGS
S




BS
 ...
Sequence KRY
Predicted secondary structure


SS confidence


Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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