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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7t02A_

Fold library idPDB HeaderMoleculeTitle
c7t02A_3.80PDB header: transferase/dnaChain: A: PDB Molecule: dna repair protein rad8;


Added to library: Sat Feb 26 09:31:41 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SDDLPPISDIEAMFDHLVSRIPDIVELVRQLNGRKLRVATMCSGTESPLLALNMIAKAIKAQHGLTLAFE
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Known secondary structure (DSSP)

SS




TT


STTTT

S
SS
S



 .........80.........90.........100.........110.........120.........130.........140
Sequence HVFSCEIEPFKQAYIERNFTPPILFRDVTELGKKRAHTAYGSMVDVPGDVDILIAGTSCVDGRTFRGMLQ
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Known secondary structure (DSSP)

SS

S
S
SGGGGSSB

BTTS


B




SBB
SSS


 .........150.........160.........170.........180.........190.........200.........210
Sequence WVKKHQPPIVILENVCNAPWDKVVEYFGQIDYDAQYTRLDTKEFYIPHTRTRVYLFATPSDLPEKWAQTV
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Known secondary structure (DSSP) S

S

SSS
TTTTB

GGGBT
S



B

 .........220.........230.........240.........250.........260.........270.........280
Sequence KDLRRPWSSPFEAFLLHTDDPNIHRARLELASARAQTSRKTTDWNRCESRHQRARQDEALGLLRPLTSWQ
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Known secondary structure (DSSP) S
B


S
GGGTS

SSS







TT

SS
SS


B
 .........290.........300.........310.........320.........330.........340.........350
Sequence EAGVCKGLDWTWNDWLLAQTERVVDLLEISTLRMAKDGIDSGFKACIWNVSQNVDRQTGSSKTALAPCLT
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Known secondary structure (DSSP) TTB




TTS
TTS
T

TTSS


SS
STT

S
SSTTS




 .........360.........370.........380.........390.........400.........410.........420
Sequence PNMIPWVTIRGGPVTGREALALQGIPVRELLLTSENEDQLADLAGNAMTTTVVGSAMIAALKVACHKITE
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Known secondary structure (DSSP) TT

TTTTB


TTT


SS



S

S

T
TTS

 .........430.........440.........450.........460.........470.........480.........490
Sequence GANPEKEAALILEKEAVDDEQVANRIIGEDYLEHHDLDLAKVTKSNLSEILDLACRSSRHCQCEGQSGTA
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Known secondary structure (DSSP)




SSB




S





S

STT

SS


 .........500.........510.........520.........530.........540.........550.........560
Sequence PNILECQECSYRACKSCGGRPEHVYAPCANQRVEPAEFEKRFKGLLPMRVRIAGLTDQCLNAVRKAAEKS
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Known secondary structure (DSSP) SSSSS

SSS

SS









S
S


T
 .........570.........580.........590.........600.........610.........620.........630
Sequence NKGSVNDNDWQLWSTALLEGIHDAEFRFRYLKRQSTWTAVYEARRAMLSLVLRNQIPEWRLTIKAPASEP
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Known secondary structure (DSSP) TS



TT


SSS

SS

SSS



SS

 .........640.........650.........660.........670.........680.........690.........700
Sequence NNSQLRALLLHPVARLQIDIAGQDVLCGPWELCIPSMKTIDIEITGKGELLPSWQASLGLQGPFANTTRW
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Known secondary structure (DSSP) TT
TSS



SSSS
SS
S








T

STTTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence SEVEISLQAEDENTLDRKLSGTYQLLPRCGQAMSSLHKKRPDDGLPQLYFFLDPTRCGESREDRYVFSTS
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Known secondary structure (DSSP)

SSS



TTS

TTS





SS




SSS
SSS
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence TERLDYGTERPVIARLDSHWREGNEKQRKVKLDVSGAWVKCPEAHLTAIRATFAIPSSASAISASLTTEG
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Known secondary structure (DSSP)




TT




S

TT



S
S
B






SS




B
STT

TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence CSHAMALLSCRVPLDPTHSESMWRAWAEIDLSHQGNTTFANLAWITERLPPLDGLKNWAHIADDVSEHVC
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Known secondary structure (DSSP) TTS

STT

SS




B

TTTTTTS



SS
S




SB
SS


 .........920.........930.........940.........950.........960.........970.........980
Sequence ERCAPRPPKIHWIKTIIAFEDKLEAGQYEHALKHRPSPFVVQLRLDQDIGSFRIGLNIVSLAHRALSRLP
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Known secondary structure (DSSP) SSSS




B








B
S


SSSS
S

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence KISLSWRLTPGHVQPRRVFILPSNKQDPKEQLRSLWWMLEQEKATGKTHTFVEEEISESLLPAVGWRAEG
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Known secondary structure (DSSP)
B













B

S


TSS
S
S


B

TTTT

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence KAERPVMVRGGVIADTVISIALVAQTLSDLKATLIVVPGHLSKQWPNEIARFTGSMFKVIVIQGMKDLQE
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Known secondary structure (DSSP)






TTT


S

SSSTTS
S
S
B



SSTTTTT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence KTIAELGKADIIVMASEIFESDVYWSRLEYLSAQPLHDRFFCDRLDAAMESLVSQTKILVLHMFRFRRVI
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Known secondary structure (DSSP)

SS
SB

TTTTTST









TTS
BS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence ADEFTYLQKKSLAAVLRLSSSYRWILSGTPPVSDFAAIRSIATFMGIHLGVEDDGEGDVQYQKARAKDQT
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Known secondary structure (DSSP) S
GGG

STT

BSS
SS

TTST






SSSS
TTTS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence QAEKFHAFREVHSRAWHNRRDELAQEFLNVFVRQNIAEIPTVEHIHTFKLPASEGAVYLELEHHLQALEM
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Known secondary structure (DSSP)












SS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence QARKETKFKNVSQGDRNARLEEALSDSKTAEEALLKRCCHFTLDLSDKTQDAKSAQEACDHITSARARQL
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Known secondary structure (DSSP) SB


S

S
TT

S
SB


S
SS

SS


STTT
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence LACQEDLSRSVNQAIALHGWIKKKGDDERQPFAEWIAFSSNISKHQGDIEAARILLKVIEKCGVKDGNIP
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Known secondary structure (DSSP)


S


SSS

S
TT
SSS

S
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence PSPSDKQSPAKMDDVKWQLREQTHLLRKLVKELVARVRSLRFFEVVRKIQKGKSDAQIVLESSECGHKPS
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Known secondary structure (DSSP) S
TT







SS
SSS

SS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence TNPDIEMAILSCCGHVACHKCMRKAAASQRCVKSGECQAAVRPTNIVKVSSLGVEGELSSGRYGAKLEHL
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Known secondary structure (DSSP) SS




SSS

STT

TTTTT





TTS


TTSS


SS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence VNLIHSIPKNERVLVFLQWEDLAGKVSEALSAGRIPHVTLAKSRANTLDRFQSARVLLLKMNSNLTTANH
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Known secondary structure (DSSP) S
SSSS
SSS



S


S





S
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence AVFLGPLFTNSLFNYRAVETQAIGRVRRYGQQKKVHIHRLLALDTIDMTIFNARRTELKEKTDWEEIPQE
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Known secondary structure (DSSP)
BS



S
SSS

SS
TTS





B
 ..
Sequence EY
Predicted secondary structure

SS confidence

Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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