PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7sipD_

Fold library id	PDB Header	Molecule	Title
c7sipD_	3.00	PDB header: membrane protein	Chain: D: PDB Molecule: potassium voltage-gated channel protein shaker;

Links to external resources
Added to library: Tue Jun 21 22:43:42 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K V W L L F E Y P E S S Q A A R V V A I I S V F V I L L S I V I F C L E T L P E F K D P F F L I E T L C I I W F T F E L T V R F L A C F C R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T S G G G
T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D V M N V I D I I A I I P Y F I T L A T S L A I L R V I R L V R V F R I F K L S R H S K G L Q I L G R T L K A S M R E L G L L I F F L F I G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G G G G G G G G G T
S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V V L F S S A V Y F A E A G S E N S F F K S I P D A F W W A V V T M T T V G Y G D M T P V G V W G K I V G S L C A I A G V L T I A L P V P V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S
T T
S
S T G G G T T
S S
S T T

. . . . . . . . . 220 . . .

Sequence I V S N F N Y F Y H R E T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	V	W	L	L	F	E	Y	P	E	S	S	Q	A	A	R	V	V	A	I	I	S	V	F	V	I	L	L	S	I	V	I	F	C	L	E	T	L	P	E	F	K	D	P	F	F	L	I	E	T	L	C	I	I	W	F	T	F	E	L	T	V	R	F	L	A	C	F	C	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	T																									T	T	S	G	G	G			T	T	T																								S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	V	M	N	V	I	D	I	I	A	I	I	P	Y	F	I	T	L	A	T	S	L	A	I	L	R	V	I	R	L	V	R	V	F	R	I	F	K	L	S	R	H	S	K	G	L	Q	I	L	G	R	T	L	K	A	S	M	R	E	L	G	L	L	I	F	F	L	F	I	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																														G	G	G	G	G	G	G	G	G	G	G	T		S											T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	V	L	F	S	S	A	V	Y	F	A	E	A	G	S	E	N	S	F	F	K	S	I	P	D	A	F	W	W	A	V	V	T	M	T	T	V	G	Y	G	D	M	T	P	V	G	V	W	G	K	I	V	G	S	L	C	A	I	A	G	V	L	T	I	A	L	P	V	P	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	S	S	S		T	T		S			S	T	G	G	G									T	T					S	S				S																				T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence	I	V	S	N	F	N	Y	F	Y	H	R	E	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)