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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7s6iC_

Fold library idPDB HeaderMoleculeTitle
c7s6iC_3.20PDB header: viral protein/immune systemChain: C: PDB Molecule: spike glycoprotein;


Added to library: 3.20
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVTKRFDNPVLPFNDG
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TT


B


S



S

TT








TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRV
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Known secondary structure (DSSP) SS

SS
BSSS

SS

SS

TGGG
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence YSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDL
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SSTTSSS






B
 .........220.........230.........240.........250.........260.........270.........280
Sequence PIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSET
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Known secondary structure (DSSP)





TTS
S
TTT

B



TTS
TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence KCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLY
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Known secondary structure (DSSP) TT
S


S








S




SB

S
S


BGGG

S

GGGGT
 .........360.........370.........380.........390.........400.........410.........420
Sequence NSASFSTFKCYGVCPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSN
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Known secondary structure (DSSP) TT


SSSS
GGGGGG
SSGGGGGGSSTT

ST



SS


T
 .........430.........440.........450.........460.........470.........480.........490
Sequence NLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYR
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Known secondary structure (DSSP) TTS

TT
B





SS


TT








SSS

SS


TT
S

B
TTS
GGGS
 .........500.........510.........520.........530.........540.........550.........560
Sequence VVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDP
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Known secondary structure (DSSP)

BSSS

S
S







SSTT





TT


TTS

S
 .........570.........580.........590.........600.........610.........620.........630
Sequence QTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTTWRVYSTGSNVFQTRAGCLIGAEHVNNSYEC
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Known secondary structure (DSSP) SS


S





TTT



TT





S
S

TT
TTS

S

B

 .........640.........650.........660.........670.........
Sequence DIPIGAGICASYQTSQSIIAYTMSLGAENSVAYSNNSIAIPTc7s6iC_
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Known secondary structure (DSSP) STT


B

S







TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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