PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c7s4gD_

Fold library id	PDB Header	Molecule	Title
c7s4gD_	2.20	PDB header: signaling protein	Chain: D: PDB Molecule: light chain fab 1g4;

Links to external resources
Added to library: Tue Jun 21 20:04:18 2022

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D I V M T Q S P D S L A V S L G E R A T I N C K S S Q S L L L S G N Q E N Y L A W H Q Q K P G Q P P K T L I T W A S T R I S G V P D R F S G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S
S S
T T T T
T T S
T T T
T T S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S G S G T D F T L T I S S L Q A E D V A V Y Y C Q Q S Y S A P Y T F G G G T K V E I K R T V A A P S V F I F P P S D E Q L K S G T A S V V C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
G G G
S S S S
B
B
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L L N N F Y P R E A K V Q W K V D N A L Q S G N S Q E S V T E Q D S K D S T Y S L S S T L T L S K A D Y E K H K V Y A C E V T H Q G L S S P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B S S
S S
B
S S
T T T
T T
S
T T
S S

. . . . . . . .

Sequence V T K S F N R G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	I	V	M	T	Q	S	P	D	S	L	A	V	S	L	G	E	R	A	T	I	N	C	K	S	S	Q	S	L	L	L	S	G	N	Q	E	N	Y	L	A	W	H	Q	Q	K	P	G	Q	P	P	K	T	L	I	T	W	A	S	T	R	I	S	G	V	P	D	R	F	S	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S						T	T	S									S	S					T	T	T	T											T	T	S								T	T	T				T	T	S		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	G	S	G	T	D	F	T	L	T	I	S	S	L	Q	A	E	D	V	A	V	Y	Y	C	Q	Q	S	Y	S	A	P	Y	T	F	G	G	G	T	K	V	E	I	K	R	T	V	A	A	P	S	V	F	I	F	P	P	S	D	E	Q	L	K	S	G	T	A	S	V	V	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T							S	S			G	G	G										S	S	S	S			B													B																T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	L	N	N	F	Y	P	R	E	A	K	V	Q	W	K	V	D	N	A	L	Q	S	G	N	S	Q	E	S	V	T	E	Q	D	S	K	D	S	T	Y	S	L	S	S	T	L	T	L	S	K	A	D	Y	E	K	H	K	V	Y	A	C	E	V	T	H	Q	G	L	S	S	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						B	S	S									S	S		B			S	S										T	T	T																	T	T		S									T	T		S	S
	.	.	.	.	.	.	.	.
Sequence	V	T	K	S	F	N	R	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)