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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7s01D_

Fold library idPDB HeaderMoleculeTitle
c7s01D_3.40PDB header: transcription/dnaChain: D: PDB Molecule: dna-directed rna polymerase;


Added to library: Sat Jul 9 08:52:00 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MEKTYNLNDILLSNEYEKIKEDIKEEIINDMASKKVKYSNTSEFAKNDFLKDEFIDLVVDGETYEITYGN
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Known secondary structure (DSSP)

SSTTS





SSS





TTTSTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LITLLIVARPFNHFKVPMTEDLLFDLSDLKEYQNYYTTLLEHFGYSNEIKSIIKDVISELAIFSGDINVT
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Known secondary structure (DSSP) TT



TTS


TT
STTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence FGNTVSIKSLIDLGNKVKRFRELLHYRLPNDEALEFNDIEAIIKKNLDEIMKILSETDNMLRYYIDSGAG
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Known secondary structure (DSSP) S





T



SSS


S

TTTSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence INSKQFGQVLSLVGSKPDLFGKIIPYPINTSFLRGLDVRSFYINALGARKALITNYQQVRNSGYLTRKIS
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Known secondary structure (DSSP)

S

B

B
TTSBB
SS
B
S
TTT


 .........290.........300.........310.........320.........330.........340.........350
Sequence MLLMDTKLIDLDDCGSHENNYLSINVENKDVLKRFSKRSYLNNNGELVEIDINDESLIGQVIKIPSPTTC
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Known secondary structure (DSSP) TT

B


S




TTTS


S

S

TTS


TT

TTTTS


GGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence ASNEGVCRKCYGKLFDINKDLNIGMIAVLLLTDPLTQRLLSAKHLLETRSSKIDWGTNFEENFIVNRNLI
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Known secondary structure (DSSP)

SS
B

TTTTS
S










TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence YPKVYNGTVIIKEDDFKEDEETEEQVFDTFTLKSGNRFISISSPMRLFLNKDLKKQLDESFYNIEEMQFE
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Known secondary structure (DSSP) SSS
STTT
TTT
STT
TSTTTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence IPLNKLDEGDSFATFIMDNNELSKPLREIKDLIETNKYIKDHNVNEVVNYFIYLLNESGINIQSVHSELI
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Known secondary structure (DSSP) TTTS
TT

S


B


TTT
S
T



 .........570.........580.........590.........600.........610.........620.........630
Sequence IREMMKLDDSDRTQFKNDKMPDYEIFRITDANLKGDSLSRSLLFEQVKKQLTTLDYDTFNKTKSSILDKL
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Known secondary structure (DSSP) SS

GGGGGSSS




SSSBTTS

STT
GGG

B

GGGGG
 .
Sequence L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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