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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7rbvA_

Fold library idPDB HeaderMoleculeTitle
c7rbvA_3.60PDB header: viral protein/immune systemChain: A: PDB Molecule: spike glycoprotein;


Added to library: Wed Jun 22 01:18:45 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPV
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Known secondary structure (DSSP)














S


B

SS



S



SS



SSS





 .........80.........90.........100.........110.........120.........130.........140
Sequence LPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWM
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Known secondary structure (DSSP)
TT
SS




SS
STTS
B
SS


B





SS
SSSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence ESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSAL
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Known secondary structure (DSSP)


S




S













SS


TT



SSS






B
 .........220.........230.........240.........250.........260.........270.........280
Sequence EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCAL
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Known secondary structure (DSSP)









B

SS
S
SSS


B







TT




SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence DPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVA
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Known secondary structure (DSSP) STSS


S







B









T
SS


SSS


SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence DYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCV
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Known secondary structure (DSSP)

SSS

SSS
GGGTTT
SS
GGGTTTSSTT


SSGGGSS


SS

 .........430.........440.........450.........460.........470.........480.........490
Sequence IAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGV
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Known secondary structure (DSSP)


SSS

SS







SS


TT









SSS


TT


TT


S



TTS
T
 .........500.........510.........520.........530.........540.........550.........560
Sequence GYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTT
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Known secondary structure (DSSP) TTS

SSSS



S







SS

BSS








TT

B


TT


 .........570.........580.........590.........600.........610.........620.........630
Sequence DAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCWRVYSTGSNVFQTRAGCLIGAEHVNN
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Known secondary structure (DSSP)

BB
TTT

B



S
TTT



SS





S


S

SS
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence SYECDIPIGAGICASYQTSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTM
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Known secondary structure (DSSP)

SSB
SSS














TT








 .........710.........720.........730.........740.........750.........760.........770
Sequence YICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPS
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Known secondary structure (DSSP) TT
TTS
SS


SS




SS

SSS


TTTS

TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence KPSKRSPIEDLLFNKVTLCAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQM
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Known secondary structure (DSSP) SSS


S



S
TTT



SS
TTGGGSSS




 .........850.........860.........870.........880.........890.........900.........910
Sequence AYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALNTLVKQLSSNFGA
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Known secondary structure (DSSP) TTT

TTTSSTTTTGGG

TTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence ISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDF
Predicted secondary structure


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Known secondary structure (DSSP) S
S
TTS
TSSS



TTS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence CGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEP
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Known secondary structure (DSSP) SSSSTT



S
SSSSSS
SSS
SSS


 .........1060.........1070.........1080....
Sequence QIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD
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Known secondary structure (DSSP)



TTSSSSSTT
B





TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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