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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7ra8E_

Fold library idPDB HeaderMoleculeTitle
c7ra8E_3.10PDB header: viral protein/immune systemChain: E: PDB Molecule: spike glycoprotein;


Added to library: Sat Aug 7 08:48:52 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHPVLPFNDGVYFASTGWIFSLLIVNVVIKVF
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Known secondary structure (DSSP)
TT


B

SS



S


TT




S








 .........80.........90.........100.........110.........120.........130.........140
Sequence EYVSNLREFVFKNIDGYFKIYSKHTPILPQGFSALEPLVDLPIGINITRFQTLYYVGYLQPRTFLLKYNE
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Known secondary structure (DSSP)

TT




S


B









T
 .........150.........160.........170.........180.........190.........200.........210
Sequence NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVY
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Known secondary structure (DSSP) TS
TTT
TT
SS

S









B


S
S


BGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence AWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADY
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Known secondary structure (DSSP) G

S

T
TT
SSS
GGGGGG

BSGGGGGGSSTT

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence NYKLPDDFTGCVIAWNSNNLDSKVNYNYLYRLFRKSNLKPFERPLQSYGFQPTNGVGYQPYRVVVLSFEL
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Known secondary structure (DSSP) T



TT






TT
S

SS


TT






SSS
TTSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDI
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Known secondary structure (DSSP)
SS












SSTT





TT


TTS

TTT

 .........430.........440.........450.........460.........470.........480.........490
Sequence TPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQQ
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Known secondary structure (DSSP)




TTT



T

GGG



SSS

S

B

STT

 .........500.........510.........520.........530.........540.........550.........560
Sequence SIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFC
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Known secondary structure (DSSP)
B

S







TT




TT
GGGGTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence TQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSPIEDLLFNKVFNGL
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Known secondary structure (DSSP)


SS




SS

SSS


TTTS

TTSTT





S
 .........640.........650.........660.........670.........680.........690.........700
Sequence TVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFN
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Known secondary structure (DSSP)

SS
TTSS




TTT

TTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence SAIGKIQDSLSSTPSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLIT
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Known secondary structure (DSSP)
GGGSGGG

TTSS
S
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence GRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYV
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Known secondary structure (DSSP) TSS



TTTSSSSTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence PAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVY
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Known secondary structure (DSSP) S
TTSSSSSS

TTS



BTTSTTTSTT



B
 .......
Sequence DPLQPEL
Predicted secondary structure






SS confidence






Known secondary structure (DSSP)
TTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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