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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c7r1bC_

Fold library idPDB HeaderMoleculeTitle
c7r1bC_2.80PDB header: viral proteinChain: C: PDB Molecule: spike glycoprotein;


Added to library: Tue Jun 21 21:46:55 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAITKRFDNPVLPFNDGV
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SS



SS



S

TT












B

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence YFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY
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Known secondary structure (DSSP) SS




SS
BSSS

SSS

BB

BB
SS



SSS





TTB
 .........150.........160.........170.........180.........190.........200.........210
Sequence SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLP
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Known secondary structure (DSSP) S


SB



B












S

TT


SSSS
S



 .........220.........230.........240.........250.........260.........270.........280
Sequence IGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK
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SSS


TTT




S





TTS
TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYN
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Known secondary structure (DSSP) TSS


S










B

SS
S



STT

SSB


 .........360.........370.........380.........390.........400.........410.........420
Sequence SASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNN
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Known secondary structure (DSSP) S

SSS
GGGTTT

BSTTSTTSSTT

ST



SS


TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence LDSKVGGNYNYLFRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRV
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Known secondary structure (DSSP) TT

SS
B






SS


TT





S

SSS

SS


TT




B
TTS
TTTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence VVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQ
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Known secondary structure (DSSP)
SSSS

BB
S







SSTT





TT

B


TT




TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence TLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPNVFQTRAGCLIGAEHVNNSYECDIPIGAG
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Known secondary structure (DSSP) T






TTT
S

T

TTT



SSS


STT
 .........640.........650.........660.........670.........680.........690.........700
Sequence ICASYQQSVIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL
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SS




SSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLF
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Known secondary structure (DSSP) TTS
S


SS




SS


TT


TTTS

TTSSS


 .........780.........790.........800.........810.........820.........830.........840
Sequence NKVTLANGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYEN
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Known secondary structure (DSSP) S






SS
TTSTTSSS




TT

TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence QKLIANQFNSAIGKIQDSLSSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQ
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Known secondary structure (DSSP)


TGGG

TTSS
S
S
 .........920.........930.........940.........950.........960.........970.........980
Sequence IDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVF
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Known secondary structure (DSSP) TSS


STTTSSSSTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGI
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Known secondary structure (DSSP) S
TTSSSSSS

SSS


B

BTTS
S
SSSSTT
 .........1060....
Sequence VNNTVYDPLQPELD
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Known secondary structure (DSSP)


B
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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