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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7qo9A_

Fold library idPDB HeaderMoleculeTitle
c7qo9A_3.88PDB header: viral proteinChain: A: PDB Molecule: spike glycoprotein,sars-cov-2 s omicron spike b.1.1.529;


Added to library: Sat Jan 29 08:47:44 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHVISGTNGTKRFDNPVLPFNDGV
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S



SS



S




SS



BTTTB







TT
B
 .........80.........90.........100.........110.........120.........130.........140
Sequence YFASIEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDHKNNKSWMESEFRVYSSA
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Known secondary structure (DSSP)

B



SS
B



SSSSTTS


BTTB


SS

B
SS

TTS




TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIVREPEDLPQGFSALEPLVDLPI
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Known secondary structure (DSSP)

S
S





TTSS

B

TT

B
S

SS



S




 .........220.........230.........240.........250.........260.........270.........280
Sequence GINITRFQTLLALHRSYSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTV
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Known secondary structure (DSSP)







BB

S









B



SSS
SSSSTSS

 .........290.........300.........310.........320.........330.........340.........350
Sequence KGIYQTSNFRVQSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG
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Known secondary structure (DSSP)



S
TTT
S

T

TTTS
SGGGGSSSS
S




TTS


SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence CLIGAEYVNNSYECDIPIGAGICASYQTSQSIIAYTMSILPVMTKTSVDCTMYICGDSTECSNLLLQYGS
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Known secondary structure (DSSP) S


STT










SSS
TT
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence FCTQLKRALTGIAVEQDKNTQEVFAQVELFVTADAGFIKQYGDCLGARDLICAQKFKGLTVLPPLLTDEM
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Known secondary structure (DSSP) SS
















TT





STTT



SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence IAQYTSALLGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDIFSRLDPPEAEVQIDRLITGRLQSLQT
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Known secondary structure (DSSP)

GGG

TTSS
S
S
 .........570.........580........
Sequence YVTQQLIRAAEIRASANLATQSAPHGVV
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Known secondary structure (DSSP)


TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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